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The map label for this gene is xerC [H]

Identifier: 150398130

GI number: 150398130

Start: 3079559

End: 3080500

Strand: Direct

Name: xerC [H]

Synonym: Smed_2933

Alternate gene names: 150398130

Gene position: 3079559-3080500 (Clockwise)

Preceding gene: 150398127

Following gene: 150398131

Centisome position: 81.43

GC content: 65.29

Gene sequence:

>942_bases
ATGTTGATGAACGAACTCCTTATCATAGGCCATCCGGAAGTGATGGCGGAACGGAAGCGCTGGCTCGCGAGCCTTGCCGA
GGAGCGCCGGCTTTCAGGAAAGACGGTCGAGGCCTATGAGCGCGACACGCGCCAATTTCTGACCTTCCTCACCGGTCACC
TGGCTGGGCCGCCGAGGCTCTCGGACATTCGCGCCCTGCGCCCCGCGGATTTGCGCGGCTTTCTGGCACAGCGCCGCAAA
GGCGGCGCTGGCGCGCGCACCCTCGGCCGTGGCTTGGCGGGTCTGCGTTCCTTCCTGCGCTATCTCGAGAAAAACGGATT
GGCCAATGCGGCCGGCGCGGGGGCGGTGCGTTCACCGAAGCAGCCAAAGTCGCTCCCCAAGCCTCTGACCGACCGCGATG
CGCTGAAAGTCGTAACCACCGACTCGCAATTGGCGGAGGAGCCGTGGATCGCCGCTCGCAATGCCGCGGTTCTGACCCTG
CTTTATGGCTGCGGCCTGCGCATAGCGGAGGCACTGGACCTGACGCCCGCCGACTTCACCGAAACGGCCAGGTCCTTGCG
GGTCACCGGAAAGGGCGGCAAGACACGGATCGTGCCTCTGATCGCAGCCGCCGCGGAAGCGGTGACGACCTACCGGAAGC
TTTGTCCTTACCACATCGAGGCTGGAGAACCGATTTTTCGCGGCGCCCGCGGCGCGAAACTTCAGCCGGCGATCATACAG
CGCGAAATGCAGAAGCTGCGCTCCGCACTCGGCCTGCCGGATTCGGCGACGCCGCACGCGCTTCGCCACTCTTTCGCGAC
CCATCTTCTTGCGGGCGGCGGGGATCTGCGCACGATACAGGAGCTGCTGGGCCATGCCAGCCTTTCGACGACGCAGGTCT
ATACCGGAGTCGATTCGGCGCGGCTCCTGGAGATCTACGACCGCGCTCATCCGCGCGCCTAA

Upstream 100 bases:

>100_bases
AAACATAAGACGCCGATGGCATCCTCGGAAGCTGAAACAAGTGCAGCAAGCAGGAGCCTGGATCCGCCAAGCTCCGTCCC
GCTGATCGCGCGTCGGGCCG

Downstream 100 bases:

>100_bases
AATCCGACGCGCTTGGCCGTTAACCAAGTGCGTTAAGGAACCCGTGACCGAGGGGGTGTAGGTTCCAGCAAATGCGGGGG
CATCCATGATCACCTTCACC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQRRK
GGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVVTTDSQLAEEPWIAARNAAVLTL
LYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQ
REMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA

Sequences:

>Translated_313_residues
MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQRRK
GGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVVTTDSQLAEEPWIAARNAAVLTL
LYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQ
REMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA
>Mature_313_residues
MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQRRK
GGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVVTTDSQLAEEPWIAARNAAVLTL
LYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQ
REMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=301, Percent_Identity=33.2225913621262, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1789261, Length=312, Percent_Identity=33.974358974359, Blast_Score=151, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34000; Mature: 34000

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRL
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
SDIRALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPK
HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
QPKSLPKPLTDRDALKVVTTDSQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFT
CCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHCHHHHHHHHHHCCHHHHHHHCCCCCHHH
ETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQ
HHHHHEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHH
REMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCCCHH
RLLEIYDRAHPRA
HHHHHHHHCCCCC
>Mature Secondary Structure
MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRL
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
SDIRALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPK
HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
QPKSLPKPLTDRDALKVVTTDSQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFT
CCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHCHHHHHHHHHHCCHHHHHHHCCCCCHHH
ETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQ
HHHHHEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHH
REMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCCCHH
RLLEIYDRAHPRA
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]