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The map label for this gene is ugpA [C]

Identifier: 150398104

GI number: 150398104

Start: 3050110

End: 3050976

Strand: Direct

Name: ugpA [C]

Synonym: Smed_2906

Alternate gene names: 150398104

Gene position: 3050110-3050976 (Clockwise)

Preceding gene: 150398103

Following gene: 150398105

Centisome position: 80.65

GC content: 58.82

Gene sequence:

>867_bases
ATGGAAAAGACCTGGAACAACAAGGCCTGGTTCATGGTCCTGCCGGTGCTGGTGCTTGTCGCTTTCTCGGCGGTGATCCC
GCTGATGACCGTCGTCAACTATTCGGTACAGGACACTTTCGGCAATAACGAGTTCTTCTGGGCCGGAACCGACTGGTTCC
TGGATGTGCTCGAATCCGACCGGTTCTGGGACGCACTCACGCGCAACCTGATCTTTTCGGCAATCATTCTCTCGATAGAA
ATCCCGCTCGGCATCATCATCGCGCTCAACATGCCGAAGAAGGGCATCGGCGTGCCGATCTGCCTCGTTCTGATGGCGCT
GCCGCTGCTCATTCCGTGGAACGTCGTCGGCACTATCTGGCAGGTCTTCGGCCGCGTCGACATCGGCCTGCTCGGACGCA
CGCTCGCCTCGCTAGGCATCAATTATAATTACGTGCAGAACCCGTTCGACGCCTGGGTCACGCTGATCGTCATGGATGTC
TGGCACTGGACAAGCCTGGTCGTGCTGCTCTGCTATGCCGGTCTGGTCTCGATCCCCGACGCCTATTACCAGGCCGCCAA
GATCGACGGCGCCTCGCGCTGGTCGGTCTTCCGCTACATCCAGCTTCCGAAGATGAAGCGTGTGCTTCTGATCGCTTTCC
TGCTGCGCTTCATGGACAGCTTCATGATCTACACGGAACCCTTCGTCGTGACCGGCGGCGGTCCCGGCAACTCGACCACC
TTCCTGTCCATTGATCTGGTCAAGACGGCGATCGGCCAATTCGACCTCGGCCCGGCCGCAGCCCTCTCGATCATCTACTT
CCTCATCATCCTGCTCTTGTCGTGGATCTTCTACACGGTGATGACCACGAGCGACGCGCAAGGCTGA

Upstream 100 bases:

>100_bases
GACGAAGACGGTGAGATTCCCGCGGAGCCGCGTGTCACCTTCGATCCGAAGGCAATCAATATCTACGCCGATTCCTGGCG
CGTCGGCGGGGAGGCCTGAT

Downstream 100 bases:

>100_bases
GAAAGGCGGGAGGAGACATCATGATGACCAACAAGCAACCACTTTCGCAGCGCCTCTCCTGGCTGGTGCCGACACTCTAT
ATCGTTTTCCTGCTCCTGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MEKTWNNKAWFMVLPVLVLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGTDWFLDVLESDRFWDALTRNLIFSAIILSIE
IPLGIIIALNMPKKGIGVPICLVLMALPLLIPWNVVGTIWQVFGRVDIGLLGRTLASLGINYNYVQNPFDAWVTLIVMDV
WHWTSLVVLLCYAGLVSIPDAYYQAAKIDGASRWSVFRYIQLPKMKRVLLIAFLLRFMDSFMIYTEPFVVTGGGPGNSTT
FLSIDLVKTAIGQFDLGPAAALSIIYFLIILLLSWIFYTVMTTSDAQG

Sequences:

>Translated_288_residues
MEKTWNNKAWFMVLPVLVLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGTDWFLDVLESDRFWDALTRNLIFSAIILSIE
IPLGIIIALNMPKKGIGVPICLVLMALPLLIPWNVVGTIWQVFGRVDIGLLGRTLASLGINYNYVQNPFDAWVTLIVMDV
WHWTSLVVLLCYAGLVSIPDAYYQAAKIDGASRWSVFRYIQLPKMKRVLLIAFLLRFMDSFMIYTEPFVVTGGGPGNSTT
FLSIDLVKTAIGQFDLGPAAALSIIYFLIILLLSWIFYTVMTTSDAQG
>Mature_288_residues
MEKTWNNKAWFMVLPVLVLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGTDWFLDVLESDRFWDALTRNLIFSAIILSIE
IPLGIIIALNMPKKGIGVPICLVLMALPLLIPWNVVGTIWQVFGRVDIGLLGRTLASLGINYNYVQNPFDAWVTLIVMDV
WHWTSLVVLLCYAGLVSIPDAYYQAAKIDGASRWSVFRYIQLPKMKRVLLIAFLLRFMDSFMIYTEPFVVTGGGPGNSTT
FLSIDLVKTAIGQFDLGPAAALSIIYFLIILLLSWIFYTVMTTSDAQG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=271, Percent_Identity=26.5682656826568, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787570, Length=234, Percent_Identity=24.3589743589744, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32330; Mature: 32330

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTWNNKAWFMVLPVLVLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGTDWFLDVLESD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHCC
RFWDALTRNLIFSAIILSIEIPLGIIIALNMPKKGIGVPICLVLMALPLLIPWNVVGTIW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
QVFGRVDIGLLGRTLASLGINYNYVQNPFDAWVTLIVMDVWHWTSLVVLLCYAGLVSIPD
HHHHCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AYYQAAKIDGASRWSVFRYIQLPKMKRVLLIAFLLRFMDSFMIYTEPFVVTGGGPGNSTT
HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCCCCCE
FLSIDLVKTAIGQFDLGPAAALSIIYFLIILLLSWIFYTVMTTSDAQG
EEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEKTWNNKAWFMVLPVLVLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGTDWFLDVLESD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHCC
RFWDALTRNLIFSAIILSIEIPLGIIIALNMPKKGIGVPICLVLMALPLLIPWNVVGTIW
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
QVFGRVDIGLLGRTLASLGINYNYVQNPFDAWVTLIVMDVWHWTSLVVLLCYAGLVSIPD
HHHHCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AYYQAAKIDGASRWSVFRYIQLPKMKRVLLIAFLLRFMDSFMIYTEPFVVTGGGPGNSTT
HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCCCCCE
FLSIDLVKTAIGQFDLGPAAALSIIYFLIILLLSWIFYTVMTTSDAQG
EEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]