| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is xylA [H]
Identifier: 150397987
GI number: 150397987
Start: 2908274
End: 2909584
Strand: Reverse
Name: xylA [H]
Synonym: Smed_2789
Alternate gene names: 150397987
Gene position: 2909584-2908274 (Counterclockwise)
Preceding gene: 150397989
Following gene: 150397986
Centisome position: 76.93
GC content: 60.34
Gene sequence:
>1311_bases GTGAGCACAGGATTTTTCGGCGATACCGCTAAGATCAAATATGAAGGTCCGGAAAGCACCAATCCGCTCGCCTTCCGCCA TTACAACCCGGACGATGTCGTCCTCGGCAAGCGTATGGAAGACCATCTGCGCTTCGCCGTCGCCTATTGGCATAGCTTCG TCTGGCCGGGCGGCGATCCCTTCGGCGGGCAGACCTTCGAGCGGCCCTGGTTCAAGGACTCGATGGAGGCCGCGAAGCTG AAGGCGGACGTGGCCTTCGAATTCTTCCAATTGCTGGGCGCGCCATTCTACTGCTTCCACGACGCGGACGTTCGCCCCGA GGGGCGGAATTTTGCCGAGAACACGCGCAACCTCAACGACATCGTCGATTATTTCGCAAAGAAGCAGGACGAGTCCGGCG TCAAGTTGCTGTGGGGCACGGCCAACCTTTTTTCGAACCGCCGCTTCATGGCGGGGGCTGCGACGAACCCGGACCCGGAT GTTTTCGCCTTCGCCGCGGCGACGGTTAAGACCTGCATCGACGCGACGCAGCGGCTCGGCGGCGAGAATTACGTGCTCTG GGGCGGGCGCGAGGGCTATGAGACCCTGCTCAACACCGACCTGAAGCGCGAGCTCGATCAGCTTGGCCGCTTTCTCAATC TGGTCGTCGAATACAAGCACAAGATCGGCTTCAAGGGTACGATCCTGATCGAGCCGAAGCCGCAGGAGCCGACCAAGCAC CAGTACGACTACGATGTCGCGACCGTCTACGGCTTCCTCAAGAAATATGGTCTCGAGAATGAGGTTAAGCTCAATATCGA GCAGGGCCATGCGATCCTCGCCGGCCATTCCTTCGAGCACGAGCTGGCGCTTGCCAATGCCCTCGGTGTCTTCGGTTCGA TCGACATGAACCGCAACGATTACCAGTCCGGATGGGATACCGACCAGTTCCCGAACAATGTTCCGGAAATGGCGCTCGCT TATTACCACGTCCTTGCGGGTGGCGGCTTCAAGACCGGTGGAACCAATTTCGACGCGAAGCTGCGCCGCCAGTCGATCGA CCCCGAAGACCTGCTGATCGGCCATATCGGCGGGATGGATTGCTGCGCGCGCGGCCTCAAGGCCGCAGCGAAGATGATTG AGGACAAGGCACTCTCGGCGCCGCTCGAAGAGCGTTATGCCGGCTGGAACGAGCTGGAGGCGCAAAAGATGCTCCAGGGC GGCTTCTCGCTCGAGGAGATCGAGGCTCGGGTTCTGAAGGCGGACGTAAATCCGCAGCCGAAATCCGGGCGGCAGGAGCT CCTGGAAAACGTGGTCAACCGCTACGTCTGA
Upstream 100 bases:
>100_bases TTCACTGTCGACGAACGAGGGAATGAAACCAATTACCTTCCACGTAATGCCGGGCTGCGCGAGACCCGGCGGCACCTATA ATACATGAGAGGAGACTGTC
Downstream 100 bases:
>100_bases CGGGCGGGGGTAAGCCTTTTTCGCGAGGGGAGCAGAAGCCGATTGCCCCTCGCGAAGAATCTGCTAGCTTCTGGCGCCTG CAACGTTGCAGGTGTATCAG
Product: xylose isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSTGFFGDTAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHSFVWPGGDPFGGQTFERPWFKDSMEAAKL KADVAFEFFQLLGAPFYCFHDADVRPEGRNFAENTRNLNDIVDYFAKKQDESGVKLLWGTANLFSNRRFMAGAATNPDPD VFAFAAATVKTCIDATQRLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGFKGTILIEPKPQEPTKH QYDYDVATVYGFLKKYGLENEVKLNIEQGHAILAGHSFEHELALANALGVFGSIDMNRNDYQSGWDTDQFPNNVPEMALA YYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQG GFSLEEIEARVLKADVNPQPKSGRQELLENVVNRYV
Sequences:
>Translated_436_residues MSTGFFGDTAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHSFVWPGGDPFGGQTFERPWFKDSMEAAKL KADVAFEFFQLLGAPFYCFHDADVRPEGRNFAENTRNLNDIVDYFAKKQDESGVKLLWGTANLFSNRRFMAGAATNPDPD VFAFAAATVKTCIDATQRLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGFKGTILIEPKPQEPTKH QYDYDVATVYGFLKKYGLENEVKLNIEQGHAILAGHSFEHELALANALGVFGSIDMNRNDYQSGWDTDQFPNNVPEMALA YYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQG GFSLEEIEARVLKADVNPQPKSGRQELLENVVNRYV >Mature_435_residues STGFFGDTAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHSFVWPGGDPFGGQTFERPWFKDSMEAAKLK ADVAFEFFQLLGAPFYCFHDADVRPEGRNFAENTRNLNDIVDYFAKKQDESGVKLLWGTANLFSNRRFMAGAATNPDPDV FAFAAATVKTCIDATQRLGGENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGFKGTILIEPKPQEPTKHQ YDYDVATVYGFLKKYGLENEVKLNIEQGHAILAGHSFEHELALANALGVFGSIDMNRNDYQSGWDTDQFPNNVPEMALAY YHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQGG FSLEEIEARVLKADVNPQPKSGRQELLENVVNRYV
Specific function: Unknown
COG id: COG2115
COG function: function code G; Xylose isomerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xylose isomerase family [H]
Homologues:
Organism=Escherichia coli, GI1789988, Length=435, Percent_Identity=62.5287356321839, Blast_Score=575, Evalue=1e-165,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013022 - InterPro: IPR012307 - InterPro: IPR013452 - InterPro: IPR001998 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.5 [H]
Molecular weight: Translated: 48972; Mature: 48840
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTGFFGDTAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHSFVWPGGDP CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC FGGQTFERPWFKDSMEAAKLKADVAFEFFQLLGAPFYCFHDADVRPEGRNFAENTRNLND CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCHHH IVDYFAKKQDESGVKLLWGTANLFSNRRFMAGAATNPDPDVFAFAAATVKTCIDATQRLG HHHHHHHCCCCCCCEEEEECHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC GENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGFKGTILIEPKPQEPTKH CCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC QYDYDVATVYGFLKKYGLENEVKLNIEQGHAILAGHSFEHELALANALGVFGSIDMNRND CCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHEECCCCCCC YQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMD CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHEEEECCCCHH CCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQGGFSLEEIEARVLKADVNPQP HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC KSGRQELLENVVNRYV CCHHHHHHHHHHHHCC >Mature Secondary Structure STGFFGDTAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHSFVWPGGDP CCCCCCCCCEEEECCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC FGGQTFERPWFKDSMEAAKLKADVAFEFFQLLGAPFYCFHDADVRPEGRNFAENTRNLND CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCHHH IVDYFAKKQDESGVKLLWGTANLFSNRRFMAGAATNPDPDVFAFAAATVKTCIDATQRLG HHHHHHHCCCCCCCEEEEECHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC GENYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHKIGFKGTILIEPKPQEPTKH CCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC QYDYDVATVYGFLKKYGLENEVKLNIEQGHAILAGHSFEHELALANALGVFGSIDMNRND CCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHEECCCCCCC YQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMD CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHEEEECCCCHH CCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQGGFSLEEIEARVLKADVNPQP HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC KSGRQELLENVVNRYV CCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]