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The map label for this gene is yciR [C]

Identifier: 150397959

GI number: 150397959

Start: 2879906

End: 2882272

Strand: Reverse

Name: yciR [C]

Synonym: Smed_2761

Alternate gene names: 150397959

Gene position: 2882272-2879906 (Counterclockwise)

Preceding gene: 150397961

Following gene: 150397958

Centisome position: 76.21

GC content: 60.12

Gene sequence:

>2367_bases
ATGCGCAATGAACAAGGGCCCCTCCCGACGGACATCTACCTGTCCTTCGTAAGCTCGCTCTATCATAATCGTGGGATGCT
CGTGATCGGCATGCTTTTGCATGTCGCCACATTTCTGCTCGTCTTTCTGAAGACATCGGACGCATTCTACCTCGCCTGCA
TCGTGGCGATCCTCTTTCTATGGGTTTTGCGCAACCTGGATATGATGCGGTTCGACCGTTCGGATCTCTCCGATGCGGAC
GATGCAGCCGTCAGAAGATGGGAAAACAGGTACATAGCCGGAGGGGTTGCCGTGGCGCTGACCTGCGGCGCAGCCTGCGC
ATATGCCATAGCGGTCACCCGGGACTCCTTCGCTCAGCTCGCGTGCATCTCGGTGACGCTTGCTTCGCTCAGTCCATTGG
TTGGCCGCAATTTCGGCTCCGAGCGGGCGGTGCTGCTGCTGTCATCGGCGGCGTGCCTGCCGATGATGATCGCCGCCCTT
TCTCTGGGCGACCCCTTCATGGCTGCGCTGGCGTTCCTGATACTCCCGTTCATTCTGTCGACTCGAATGATGGCCAACAA
TGTACGCTCCTTCCTCAGCGAAAAAGTGCTCTCGGCGAGGAACGATAACCTGCTTTCGGCCGAGCAAATCGGCACGATCG
CCAGCCAGTTCGAGACTGCACTCAACAGTATGACGCGCGGCCTTTTCATGCTGGACAGGCACAGTCGCGTTGCTGTCGTG
AATGAGCGTGCCGCCGAACTTCTTCGCCTCGGCGACAAAGCTGAATTGAAAGGAATGCCGATCGACGACGTGCTCGAGCG
TGGTGCTCGGGGCATGGCGCTCGACGCGGAAAAGAGCGAGTACATCGCAACCCAGCTTCACCTCCTGATCGCTGGCAGGC
GCAGCCGCACTCTCATCTCCATTGCGGAAGATCTCTTCCTCGAATTTGCGGCCTACCCTCGGGAGAACGGCGAAGTCGTC
CTGATTTTGGAAGACATGACGGCGCATGTTCTGGCGGAGCGGCAGATTCTGTACATGGCGCGATTCGACATGCTGACCGG
ACTGCCGAGCCGTAATCATTTTGCCGAGCTTGTTCACGACGCAATGGGGGTCGACGCCGCGCCCGACCGCGATGTCGGCT
TTCTGCTCCTCGACGTTGCCGAGTTCAGGCACGTCAACGACACGAGGGGCCATATTGCCGGCGATAAACTGCTCAAGGCG
ATTGCAGTCCGATTGAAAAGCCTCGCGGCAGCCGAAACGATCGCCGCCCGTCTGATGGGCGACGAGTTCTTGGTGTTTTT
CCCGAACCTGCCAGGTCGCTCGGATCTGAAGGAGCGGATATGCGGTCTCCATGCCGAACTGCAAGGCACCTACGTGGCCG
ATGGCTTGAGATTCGAGATGGCGATAGATGGCGGCTTCGTCCTCGTGAATGCTAGCGATTTCCGGTTCGAGGAATTGCAG
ATCAAGGCGGACTTGGCGTTGTCGGAAGCGAAAAAACGCGGCCATGGCGGCTGCGCTGCCTTCGAGGAGGCAATGGAGGC
CCGCTATCTCGACCGTCTGAAGCTCAAGGTCGATCTGCGGGAGGCGGTCGCCGGGCGCGCCCTCGACCTTGCCTATCAAC
CGATGTTCACACCGGACGGGTCACGGGTCGAGAGCTGCGAGGCCTTGACGCGCTGGATCCACCCCGAACGCGGTTCGGTA
CCGCCCCCGGTCTTCATCCAGCTTGCTGAAGAGCTGGGGCTCGTCACGGAGTTAACGCGTCTGGTGGTCGCGCAGGCCTG
CCGCGACTGCCTGAGCTGGCCACCGGAAGTGGCGGTCTCCGTCAATCTGTCGGTTCTCGATCTGCGCGGAGACGAGATAG
TGGGGGTCCTGACCGGGATTCTGAAGGAGACGGGACTGGCGCCGGATCGGCTGCATCTGGAAATTACGGAAAGCTGCCTG
ATGGCCGACCCGGCGCGGGTCCAGAAGGTCCTTCATCAATTGCGTGCGGGTGGCATGACGATCGCGATAGATGACTTCGG
AACCGGTTACTCGAGCCTCAGCTATCTCGATTCGCTCCCGGTCAGCGTCATCAAGATCGACCGATCCTTCGTTCATGATA
TCGACGAAGACTCGCGACACTTCAAATTGCTGCTCGGCATTGTCAATCTGGCCCGCGCCCTTGAACTCAAGATCGTCGCG
GAGGGGGTGGAGACGCCCGAGCAGCTGCAGCTCCTGCGCGAGCGCAATTGTGCGGATCTGATTCAGGGATTCGTCTTTGC
CGCGCCGATGCCCGCTTCTGCCGTTGCAGCCCTTTGCACACACACGTCGCAGGCCAGGGCCGCATCAGGCGGCTCTCCCT
CCGCCGACTTTCATGAAAATCCGTCACAGCCCAAGTCCCTGGGCTGA

Upstream 100 bases:

>100_bases
CGTTTCCGCCGTTGCTAAACTCTTCGGATTCTTCTGCGCCGATCGAAAAATTTCGTTAAGCGTTTGAATCTAACATGCGG
TAAACCGGAGCTGGTTCACG

Downstream 100 bases:

>100_bases
ACGTCTCTCCGGCGGTGGGTGCGCAGGGGCGAGGCGAAAAGGCATCCGCTCGATTTGCCGCACTCGCTCGGGGCGGGTTT
TCGTTGCGAACGGGCGGCGC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRNEQGPLPTDIYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFLWVLRNLDMMRFDRSDLSDAD
DAAVRRWENRYIAGGVAVALTCGAACAYAIAVTRDSFAQLACISVTLASLSPLVGRNFGSERAVLLLSSAACLPMMIAAL
SLGDPFMAALAFLILPFILSTRMMANNVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVV
NERAAELLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLISIAEDLFLEFAAYPRENGEVV
LILEDMTAHVLAERQILYMARFDMLTGLPSRNHFAELVHDAMGVDAAPDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKA
IAVRLKSLAAAETIAARLMGDEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDFRFEELQ
IKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQPMFTPDGSRVESCEALTRWIHPERGSV
PPPVFIQLAEELGLVTELTRLVVAQACRDCLSWPPEVAVSVNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCL
MADPARVQKVLHQLRAGGMTIAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVNLARALELKIVA
EGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAALCTHTSQARAASGGSPSADFHENPSQPKSLG

Sequences:

>Translated_788_residues
MRNEQGPLPTDIYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFLWVLRNLDMMRFDRSDLSDAD
DAAVRRWENRYIAGGVAVALTCGAACAYAIAVTRDSFAQLACISVTLASLSPLVGRNFGSERAVLLLSSAACLPMMIAAL
SLGDPFMAALAFLILPFILSTRMMANNVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVV
NERAAELLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLISIAEDLFLEFAAYPRENGEVV
LILEDMTAHVLAERQILYMARFDMLTGLPSRNHFAELVHDAMGVDAAPDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKA
IAVRLKSLAAAETIAARLMGDEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDFRFEELQ
IKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQPMFTPDGSRVESCEALTRWIHPERGSV
PPPVFIQLAEELGLVTELTRLVVAQACRDCLSWPPEVAVSVNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCL
MADPARVQKVLHQLRAGGMTIAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVNLARALELKIVA
EGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAALCTHTSQARAASGGSPSADFHENPSQPKSLG
>Mature_788_residues
MRNEQGPLPTDIYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFLWVLRNLDMMRFDRSDLSDAD
DAAVRRWENRYIAGGVAVALTCGAACAYAIAVTRDSFAQLACISVTLASLSPLVGRNFGSERAVLLLSSAACLPMMIAAL
SLGDPFMAALAFLILPFILSTRMMANNVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVV
NERAAELLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLISIAEDLFLEFAAYPRENGEVV
LILEDMTAHVLAERQILYMARFDMLTGLPSRNHFAELVHDAMGVDAAPDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKA
IAVRLKSLAAAETIAARLMGDEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDFRFEELQ
IKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQPMFTPDGSRVESCEALTRWIHPERGSV
PPPVFIQLAEELGLVTELTRLVVAQACRDCLSWPPEVAVSVNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCL
MADPARVQKVLHQLRAGGMTIAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVNLARALELKIVA
EGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAALCTHTSQARAASGGSPSADFHENPSQPKSLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=443, Percent_Identity=34.7629796839729, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=32.5688073394495, Blast_Score=212, Evalue=6e-56,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=34.1772151898734, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=33.6065573770492, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1786507, Length=227, Percent_Identity=34.3612334801762, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=35.8649789029536, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=31.9672131147541, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI226510982, Length=286, Percent_Identity=32.1678321678322, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=34.5528455284553, Blast_Score=123, Evalue=6e-29,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=31.6872427983539, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=255, Percent_Identity=30.9803921568627, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1788849, Length=336, Percent_Identity=27.0833333333333, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788381, Length=446, Percent_Identity=24.2152466367713, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=28.8235294117647, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081881, Length=113, Percent_Identity=32.7433628318584, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 86184; Mature: 86184

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEQGPLPTDIYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFL
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
WVLRNLDMMRFDRSDLSDADDAAVRRWENRYIAGGVAVALTCGAACAYAIAVTRDSFAQL
HHHCCCCHHHCCCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ACISVTLASLSPLVGRNFGSERAVLLLSSAACLPMMIAALSLGDPFMAALAFLILPFILS
HHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TRMMANNVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEE
NERAAELLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLIS
HHHHHHHHHCCCCHHCCCCCHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHH
IAEDLFLEFAAYPRENGEVVLILEDMTAHVLAERQILYMARFDMLTGLPSRNHFAELVHD
HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AMGVDAAPDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKAIAVRLKSLAAAETIAARLMG
HHCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDFRFEELQ
CCEEEECCCCCCHHHHHHHHHCHHHHCCCEEEECCEEEEEEECCCEEEEECCCCCEEHEE
IKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQPMFTPDG
EHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHEECCCCCCCC
SRVESCEALTRWIHPERGSVPPPVFIQLAEELGLVTELTRLVVAQACRDCLSWPPEVAVS
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
VNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCLMADPARVQKVLHQLRAGGMT
EEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHCCEE
IAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVNLARALELKIVA
EEEECCCCCHHHHHHHHCCCHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEE
EGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAALCTHTSQARAASGGSPSADFHEN
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCC
PSQPKSLG
CCCCCCCC
>Mature Secondary Structure
MRNEQGPLPTDIYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFL
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
WVLRNLDMMRFDRSDLSDADDAAVRRWENRYIAGGVAVALTCGAACAYAIAVTRDSFAQL
HHHCCCCHHHCCCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ACISVTLASLSPLVGRNFGSERAVLLLSSAACLPMMIAALSLGDPFMAALAFLILPFILS
HHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TRMMANNVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEE
NERAAELLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLIS
HHHHHHHHHCCCCHHCCCCCHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHH
IAEDLFLEFAAYPRENGEVVLILEDMTAHVLAERQILYMARFDMLTGLPSRNHFAELVHD
HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AMGVDAAPDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKAIAVRLKSLAAAETIAARLMG
HHCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDFRFEELQ
CCEEEECCCCCCHHHHHHHHHCHHHHCCCEEEECCEEEEEEECCCEEEEECCCCCEEHEE
IKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQPMFTPDG
EHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHEECCCCCCCC
SRVESCEALTRWIHPERGSVPPPVFIQLAEELGLVTELTRLVVAQACRDCLSWPPEVAVS
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
VNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCLMADPARVQKVLHQLRAGGMT
EEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHCCEE
IAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVNLARALELKIVA
EEEECCCCCHHHHHHHHCCCHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEE
EGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAALCTHTSQARAASGGSPSADFHEN
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCC
PSQPKSLG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]