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The map label for this gene is soxB [H]

Identifier: 150397950

GI number: 150397950

Start: 2871093

End: 2872346

Strand: Reverse

Name: soxB [H]

Synonym: Smed_2752

Alternate gene names: 150397950

Gene position: 2872346-2871093 (Counterclockwise)

Preceding gene: 150397955

Following gene: 150397949

Centisome position: 75.95

GC content: 62.28

Gene sequence:

>1254_bases
ATGCGCAAATATTCTGTTTTTGCCGTGGCGCGCGAAGCGCTGCGCGGGCACAAGGGTTGGGGCCCGCACTGGGCCTCGCC
GGAGCCGCGCAAGCAATATGACGCAATCATCATCGGGGGTGGCGGCCATGGCCTCGGCGCGGCCTACTATCTTGCCAAAG
AGCATGGCATAACCAATGTCGCCGTGCTCGAGAAAGGCTGGATCGGCGGCGGCAACACCGGCCGAAACACGACGATCATC
CGGTCCAACTATCTCTATGAAGAGAGCATGGACATCTACGAGCATTCGCTGAAGCTCTGGGAGAACCTGTCGCAGGACCT
GAATTACAACGTGATGTACTCGCCGCGCGGCGTGATGATGCTTTCGCACAACATCCACGACCAGCAGTCCTTCAAGCGGC
ATATCAATGCCAACCGGCTCTACGGCATCGATAATGAGTGGCTGACGCCGGAACAGGCGAAGGCCTACTGCCCGCCGCTC
GATATCTCGAAGACCGCCCGATATCCGATCAACGGCGCGGCACTGCAGCGCCGCGGCGGTACGGCGCGCCACGACGCGGT
TGCCTGGGGCTATGCCCGCGCTGCGTCGGACCGTGGCGTCCACATCATCCAGAACTGCGAAGTGACCGGCATCAGGCGCG
ACGAAACCGGGCATGTGACCGGCGTCGACACCAATCGCGGTTTCATCGGTGCGAAGAAGGTCGGCATCTCGGCTGCGGGC
CACTCGTCGGTTCTGATGCAGATGGCGGATGTGCGCGTCCCGCTGCAGAGCCAACCGCTGCAGGCGCTCGTTTCCGAGCC
CTTGAAGCCCATCTTCCCCTGCGTCGTCATGTCGAACTCCGTGCATGCGTATATTTCGCAGTCCGATAAGGGCGAGTTCG
TTATCGGCGCCGGCACCGACCAATATAACTCCTACTCGCAGACCGGCGGGCTGCAGATCATCACGCATACATTGGATGCG
ATCTGTGAGCTCTTCCCGATGTTTCGTCGCGTCAAGATGATGCGGCAATGGGGCGGCATCGTCGATGTCACTCAGGATCG
TTCGCCGATTCAAGGCGTGACGCCGGTGCCCGGCCTTTATCTCAATGCCGGATGGGGAACGGGCGGTTTCAAGGCGACGC
CGGGTTCGGCCAATCTCTTCGCTCATCTCATCGCGCGCGGGGAGCCGCACCGGCTGGCCGCGGGGCTTACCCTCGAGCGC
TTTCGCACCGGGCGGCTCATCGACGAGGCGGCGGCTGCCGCCGTTGCCCATTAA

Upstream 100 bases:

>100_bases
AAGTCCGCCGGATCGCGTCGCAAAAGAAACGTTGCGTGGTCTCCGGATTTGCGATTTCTAACGCCAACGGACGTTTACCG
GTTCATGGAGTAGCAGGCGG

Downstream 100 bases:

>100_bases
AGCATGAGCTTACCGGAGCGAAGCGAGGATCGATACGGTTATGCTTCAGAGAAACGAACATAGAGCGGCCTTTCGCGCCT
TCCGCTGAAGCGCGGCGCTC

Product: sarcosine oxidase subunit beta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRKYSVFAVAREALRGHKGWGPHWASPEPRKQYDAIIIGGGGHGLGAAYYLAKEHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYEESMDIYEHSLKLWENLSQDLNYNVMYSPRGVMMLSHNIHDQQSFKRHINANRLYGIDNEWLTPEQAKAYCPPL
DISKTARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRDETGHVTGVDTNRGFIGAKKVGISAAG
HSSVLMQMADVRVPLQSQPLQALVSEPLKPIFPCVVMSNSVHAYISQSDKGEFVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDVTQDRSPIQGVTPVPGLYLNAGWGTGGFKATPGSANLFAHLIARGEPHRLAAGLTLER
FRTGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MRKYSVFAVAREALRGHKGWGPHWASPEPRKQYDAIIIGGGGHGLGAAYYLAKEHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYEESMDIYEHSLKLWENLSQDLNYNVMYSPRGVMMLSHNIHDQQSFKRHINANRLYGIDNEWLTPEQAKAYCPPL
DISKTARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRDETGHVTGVDTNRGFIGAKKVGISAAG
HSSVLMQMADVRVPLQSQPLQALVSEPLKPIFPCVVMSNSVHAYISQSDKGEFVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDVTQDRSPIQGVTPVPGLYLNAGWGTGGFKATPGSANLFAHLIARGEPHRLAAGLTLER
FRTGRLIDEAAAAAVAH
>Mature_417_residues
MRKYSVFAVAREALRGHKGWGPHWASPEPRKQYDAIIIGGGGHGLGAAYYLAKEHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYEESMDIYEHSLKLWENLSQDLNYNVMYSPRGVMMLSHNIHDQQSFKRHINANRLYGIDNEWLTPEQAKAYCPPL
DISKTARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRDETGHVTGVDTNRGFIGAKKVGISAAG
HSSVLMQMADVRVPLQSQPLQALVSEPLKPIFPCVVMSNSVHAYISQSDKGEFVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDVTQDRSPIQGVTPVPGLYLNAGWGTGGFKATPGSANLFAHLIARGEPHRLAAGLTLER
FRTGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=385, Percent_Identity=23.6363636363636, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI21361378, Length=385, Percent_Identity=23.6363636363636, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI20130091, Length=382, Percent_Identity=21.4659685863874, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45687; Mature: 45687

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYSVFAVAREALRGHKGWGPHWASPEPRKQYDAIIIGGGGHGLGAAYYLAKEHGITNV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCCEE
AVLEKGWIGGGNTGRNTTIIRSNYLYEESMDIYEHSLKLWENLSQDLNYNVMYSPRGVMM
EEEECCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEE
LSHNIHDQQSFKRHINANRLYGIDNEWLTPEQAKAYCPPLDISKTARYPINGAALQRRGG
EECCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC
TARHDAVAWGYARAASDRGVHIIQNCEVTGIRRDETGHVTGVDTNRGFIGAKKVGISAAG
CCCHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEEECCCCCEEEEHCCCEECCC
HSSVLMQMADVRVPLQSQPLQALVSEPLKPIFPCVVMSNSVHAYISQSDKGEFVIGAGTD
HHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHEEECCCEEEEEECCCCCCEEEECCCC
QYNSYSQTGGLQIITHTLDAICELFPMFRRVKMMRQWGGIVDVTQDRSPIQGVTPVPGLY
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEE
LNAGWGTGGFKATPGSANLFAHLIARGEPHRLAAGLTLERFRTGRLIDEAAAAAVAH
EECCCCCCCCEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRKYSVFAVAREALRGHKGWGPHWASPEPRKQYDAIIIGGGGHGLGAAYYLAKEHGITNV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCCEE
AVLEKGWIGGGNTGRNTTIIRSNYLYEESMDIYEHSLKLWENLSQDLNYNVMYSPRGVMM
EEEECCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEE
LSHNIHDQQSFKRHINANRLYGIDNEWLTPEQAKAYCPPLDISKTARYPINGAALQRRGG
EECCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC
TARHDAVAWGYARAASDRGVHIIQNCEVTGIRRDETGHVTGVDTNRGFIGAKKVGISAAG
CCCHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEEECCCCCEEEEHCCCEECCC
HSSVLMQMADVRVPLQSQPLQALVSEPLKPIFPCVVMSNSVHAYISQSDKGEFVIGAGTD
HHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHEEECCCEEEEEECCCCCCEEEECCCC
QYNSYSQTGGLQIITHTLDAICELFPMFRRVKMMRQWGGIVDVTQDRSPIQGVTPVPGLY
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEE
LNAGWGTGGFKATPGSANLFAHLIARGEPHRLAAGLTLERFRTGRLIDEAAAAAVAH
EECCCCCCCCEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]