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The map label for this gene is soxD [H]

Identifier: 150397949

GI number: 150397949

Start: 2870632

End: 2870973

Strand: Reverse

Name: soxD [H]

Synonym: Smed_2751

Alternate gene names: 150397949

Gene position: 2870973-2870632 (Counterclockwise)

Preceding gene: 150397950

Following gene: 150397948

Centisome position: 75.91

GC content: 57.02

Gene sequence:

>342_bases
ATGCTGTTGATTTACTGCCCCTATTGCGAAGAAGAGCGCTCCGAGCTCGAATTCCGCAATGCCGGCGATGCCCATATCGT
CCGGCCGGCCAATATCGCCGAGATCAGCGATGAAGAATTCGAGGAATACTTCTTCCTCCGTCAGAACCCGAAAGGGCTGA
TCTATGAGAGATGGCGCCATATCCACGGCTGCGGCCGCTTTTTCAATGCTGTCCGTGACACCGTAAGCGACCGCTTCCAC
GTGACCTACAAGGCCGGCGAGCCGAAGCCCGACCTCGATGCCGAGCCGAAGACGAACGAAACGGTCGAGACCTACGAGGC
ATTGGAAGGAGTGGCAGAATGA

Upstream 100 bases:

>100_bases
GAAGCGAGGATCGATACGGTTATGCTTCAGAGAAACGAACATAGAGCGGCCTTTCGCGCCTTCCGCTGAAGCGCGGCGCT
CTGATGCGAGGACATTCCAG

Downstream 100 bases:

>100_bases
CCGGGGTCAACCGCATTTCAGGCGCGGGCCGCCTGACACCGGCGCGCACCGCCCGCTTCACCTTCGACGGCCGGACGCTG
ACGGCGCTCGAGGGCGACAC

Product: sarcosine oxidase subunit delta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MLLIYCPYCEEERSELEFRNAGDAHIVRPANIAEISDEEFEEYFFLRQNPKGLIYERWRHIHGCGRFFNAVRDTVSDRFH
VTYKAGEPKPDLDAEPKTNETVETYEALEGVAE

Sequences:

>Translated_113_residues
MLLIYCPYCEEERSELEFRNAGDAHIVRPANIAEISDEEFEEYFFLRQNPKGLIYERWRHIHGCGRFFNAVRDTVSDRFH
VTYKAGEPKPDLDAEPKTNETVETYEALEGVAE
>Mature_113_residues
MLLIYCPYCEEERSELEFRNAGDAHIVRPANIAEISDEEFEEYFFLRQNPKGLIYERWRHIHGCGRFFNAVRDTVSDRFH
VTYKAGEPKPDLDAEPKTNETVETYEALEGVAE

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 13232; Mature: 13232

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIYCPYCEEERSELEFRNAGDAHIVRPANIAEISDEEFEEYFFLRQNPKGLIYERWRH
CEEEECCCCCCHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
IHGCGRFFNAVRDTVSDRFHVTYKAGEPKPDLDAEPKTNETVETYEALEGVAE
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLLIYCPYCEEERSELEFRNAGDAHIVRPANIAEISDEEFEEYFFLRQNPKGLIYERWRH
CEEEECCCCCCHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
IHGCGRFFNAVRDTVSDRFHVTYKAGEPKPDLDAEPKTNETVETYEALEGVAE
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]