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The map label for this gene is yjhU [H]

Identifier: 150397900

GI number: 150397900

Start: 2809744

End: 2810769

Strand: Direct

Name: yjhU [H]

Synonym: Smed_2702

Alternate gene names: 150397900

Gene position: 2809744-2810769 (Clockwise)

Preceding gene: 150397889

Following gene: 150397901

Centisome position: 74.29

GC content: 62.28

Gene sequence:

>1026_bases
ATGATTGACAAATGCCACCCGCCTCTGCCAGATAGCCAAATGGCAAGAGAGAAGAGTTCAGCCAGGGCTGGCGACGAATC
GGCGAAAAGCGTGCCCACGGAGTTCGATGACGCCGTGATGTGGGCCGCATGGCTCTACTATGCGGATCAGATGACGCAGA
GCGAGATCGCCAAGCAGCTCAACGTATCTCGCGCAACCATCGTCAATTATCTGCAAGAAGCGCGCGAGCGCGGCATCGTC
TCGGTCAACATCAATCCCAAGGCCGGTGGCCGCACCAGTGTCGCCCGCGCTCTGATGGAGAAATTCAACCTTCAGGGCGC
CTTCGTCATCCCCAACAGCGATGAGGAAAGCCTGTCGCGAAGGCTCGGCGACGCCGGTGCGCGGGTATTGGCCGACCAGA
TCGAGGATGGAGATACGATCGGCGTTGCCTGGGGCCGCACAGTGCTCGCCGTCGCCGACCGAATTTCGTTGCCGCGGCCG
GTCGGCAACCTCACTGTCGTTCAGGTCTCCGGCAGCTCGACCGGAGAACCGAATTTCTCGCCCGAACTCTGCACTTCGCT
GCTTTCGAACCGCATTCATGCGCGCTGCGTCAACCTCCTGGCACCCGCCGTGCTGTCGACACGCGAACTGAAGGCGGCGC
TGCTCAATGAACCCGTGCTCCGGAAGCAGATGGAGCTGGTCCATTCGACCAATCGCATTCTCTTCGGCGTCGGCGACATC
GGTCCGAAGAGCACCGTGCGGGCATCCGGCATCGCCAGCCAGGAGGAGATCGACGATTACGTCGCGCGCGGCGCCACCGC
CGTGATTATCGGGCGCTTCATCGATGCGCATGGCGCTGCGATCGGCGGCGACCACGACGAGCGCATGGTCGGCATCTCGC
TCGACGAACTGAAGCAGGTGGAGAGCCGAATCTGCGTTGCGGGTGGCGCGCTTAAAATCGCTGCGATCACCGCCACGCTC
GAAGCAGGCTACGCCACCCATTTCGTGACAGACATCGCTACGGGAGAGGCGTTGCTGGCGGAGTGA

Upstream 100 bases:

>100_bases
GATAGTCTGCTGCCTTGACGTTTCCATTCGCTGGTCCGTTTTCTACTGCTGGATAGCATGTGACAACACCTGTTGGCATA
TGTCAATACACTTGCCAGAG

Downstream 100 bases:

>100_bases
TGGGCTGCCGGCAGGCGAGACCGGCGCCCGACGGAAAGGGAGGAAGGCCGCCGCATGCGCTGCGGTCTGAGGAGGACGGA
AGGACCGCGTGGTCTTGCGT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIDKCHPPLPDSQMAREKSSARAGDESAKSVPTEFDDAVMWAAWLYYADQMTQSEIAKQLNVSRATIVNYLQEARERGIV
SVNINPKAGGRTSVARALMEKFNLQGAFVIPNSDEESLSRRLGDAGARVLADQIEDGDTIGVAWGRTVLAVADRISLPRP
VGNLTVVQVSGSSTGEPNFSPELCTSLLSNRIHARCVNLLAPAVLSTRELKAALLNEPVLRKQMELVHSTNRILFGVGDI
GPKSTVRASGIASQEEIDDYVARGATAVIIGRFIDAHGAAIGGDHDERMVGISLDELKQVESRICVAGGALKIAAITATL
EAGYATHFVTDIATGEALLAE

Sequences:

>Translated_341_residues
MIDKCHPPLPDSQMAREKSSARAGDESAKSVPTEFDDAVMWAAWLYYADQMTQSEIAKQLNVSRATIVNYLQEARERGIV
SVNINPKAGGRTSVARALMEKFNLQGAFVIPNSDEESLSRRLGDAGARVLADQIEDGDTIGVAWGRTVLAVADRISLPRP
VGNLTVVQVSGSSTGEPNFSPELCTSLLSNRIHARCVNLLAPAVLSTRELKAALLNEPVLRKQMELVHSTNRILFGVGDI
GPKSTVRASGIASQEEIDDYVARGATAVIIGRFIDAHGAAIGGDHDERMVGISLDELKQVESRICVAGGALKIAAITATL
EAGYATHFVTDIATGEALLAE
>Mature_341_residues
MIDKCHPPLPDSQMAREKSSARAGDESAKSVPTEFDDAVMWAAWLYYADQMTQSEIAKQLNVSRATIVNYLQEARERGIV
SVNINPKAGGRTSVARALMEKFNLQGAFVIPNSDEESLSRRLGDAGARVLADQIEDGDTIGVAWGRTVLAVADRISLPRP
VGNLTVVQVSGSSTGEPNFSPELCTSLLSNRIHARCVNLLAPAVLSTRELKAALLNEPVLRKQMELVHSTNRILFGVGDI
GPKSTVRASGIASQEEIDDYVARGATAVIIGRFIDAHGAAIGGDHDERMVGISLDELKQVESRICVAGGALKIAAITATL
EAGYATHFVTDIATGEALLAE

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=312, Percent_Identity=35.8974358974359, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=28.3870967741935, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR007324 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36417; Mature: 36417

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKCHPPLPDSQMAREKSSARAGDESAKSVPTEFDDAVMWAAWLYYADQMTQSEIAKQL
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVSRATIVNYLQEARERGIVSVNINPKAGGRTSVARALMEKFNLQGAFVIPNSDEESLSR
CCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
RLGDAGARVLADQIEDGDTIGVAWGRTVLAVADRISLPRPVGNLTVVQVSGSSTGEPNFS
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCC
PELCTSLLSNRIHARCVNLLAPAVLSTRELKAALLNEPVLRKQMELVHSTNRILFGVGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCC
GPKSTVRASGIASQEEIDDYVARGATAVIIGRFIDAHGAAIGGDHDERMVGISLDELKQV
CCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
ESRICVAGGALKIAAITATLEAGYATHFVTDIATGEALLAE
HHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MIDKCHPPLPDSQMAREKSSARAGDESAKSVPTEFDDAVMWAAWLYYADQMTQSEIAKQL
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVSRATIVNYLQEARERGIVSVNINPKAGGRTSVARALMEKFNLQGAFVIPNSDEESLSR
CCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
RLGDAGARVLADQIEDGDTIGVAWGRTVLAVADRISLPRPVGNLTVVQVSGSSTGEPNFS
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCC
PELCTSLLSNRIHARCVNLLAPAVLSTRELKAALLNEPVLRKQMELVHSTNRILFGVGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCC
GPKSTVRASGIASQEEIDDYVARGATAVIIGRFIDAHGAAIGGDHDERMVGISLDELKQV
CCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
ESRICVAGGALKIAAITATLEAGYATHFVTDIATGEALLAE
HHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]