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The map label for this gene is ycjP [C]

Identifier: 150397895

GI number: 150397895

Start: 2804060

End: 2804941

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_2697

Alternate gene names: 150397895

Gene position: 2804941-2804060 (Counterclockwise)

Preceding gene: 150397896

Following gene: 150397894

Centisome position: 74.17

GC content: 61.56

Gene sequence:

>882_bases
ATGCAACAGAGCGCTCTCGCCCGCACGCTGCGCACCATTGCCGGTTGGCTCGTCGTCGGGGCATTCTTTTTCCCGATCTA
CTTCTGGACCTCGGTCGCCTTCCGCGACGCCAAGGACATTTTCAACTGGCCGCCGATCTTCTTCAATTTCCAGCCGACGG
TGAGGAATTTCGAGCAGGTCTTCGGCATCTCGCTGGGCTTCGGTTACGGCAGCCAGGAAGCCGTGACGCCCGGCGGCGGC
AACTTCTACATGGGGCCGCGCCTTTGGGACTCGATCGTCGTCGCATCTTTGTCGACGGTGCTGGCGATCGTGGTTGCGAC
GCTTGCTTCCTATGCTTTGTCGCGCATGCATTTCCGCGGCCGCCATGAATTCGTCAACTGGGTGCTGTCGACCCGCATGA
TGCCGCCAGTAGCGGTGGCGATCCCGATGTTCTTCATCTTCAAGCAGTTCAACCTGCTCGACACCTATGTCGGCGTCATA
CTCGTGCATGGTCTCATGAACCTGCCTCTGGCGGTGCTGCTCCTGAAGAGCTTCTTCGACGACATCCCCGCGGAGATCGA
CGAGAGCGCGCTGCTCGACGGCGCGTCGCGCTGGACGATCTTCCGCCGCATCGTGCTGCCGATGGCCAAGGGCGGCATAG
CCGCTACCGCGGTGCTCTGCTTTATCTTCTCATGGACGGAGTTCCTCTTCGTCCTGACCTTGACGCAGACGGGTCTGAAG
ACCGTGCCCGTCGTGTCGTCGACCTTCGTCACATCGATCGGAACCGCCTGGGGCAACATGGCCGCCCTCGGTGCGGCGGC
GATCGTGCCCGCCTTCATCGTGGTCCTGCTCGTTCAACGCCATCTCGTGCGTGGTCTGACGATGGGGTCTCTGAAGCAGT
GA

Upstream 100 bases:

>100_bases
CTGAAATGGGGCTACGGGGCCACGCTGAGCCTGACGAGCCTGGTCATCGTCATGGTCATGGCCAACATATTCATCCGCGT
TGCAAAGGTGAGGTGGTAAC

Downstream 100 bases:

>100_bases
GAATGCGGCGCCTGCGCCGACAACAGGAGAGATCGGGGCCACTTCCGGCGTCGATCGAGGAGGAGAGACATGAAAGAGAA
AGACAGAAAGTTTTATCTCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MQQSALARTLRTIAGWLVVGAFFFPIYFWTSVAFRDAKDIFNWPPIFFNFQPTVRNFEQVFGISLGFGYGSQEAVTPGGG
NFYMGPRLWDSIVVASLSTVLAIVVATLASYALSRMHFRGRHEFVNWVLSTRMMPPVAVAIPMFFIFKQFNLLDTYVGVI
LVHGLMNLPLAVLLLKSFFDDIPAEIDESALLDGASRWTIFRRIVLPMAKGGIAATAVLCFIFSWTEFLFVLTLTQTGLK
TVPVVSSTFVTSIGTAWGNMAALGAAAIVPAFIVVLLVQRHLVRGLTMGSLKQ

Sequences:

>Translated_293_residues
MQQSALARTLRTIAGWLVVGAFFFPIYFWTSVAFRDAKDIFNWPPIFFNFQPTVRNFEQVFGISLGFGYGSQEAVTPGGG
NFYMGPRLWDSIVVASLSTVLAIVVATLASYALSRMHFRGRHEFVNWVLSTRMMPPVAVAIPMFFIFKQFNLLDTYVGVI
LVHGLMNLPLAVLLLKSFFDDIPAEIDESALLDGASRWTIFRRIVLPMAKGGIAATAVLCFIFSWTEFLFVLTLTQTGLK
TVPVVSSTFVTSIGTAWGNMAALGAAAIVPAFIVVLLVQRHLVRGLTMGSLKQ
>Mature_293_residues
MQQSALARTLRTIAGWLVVGAFFFPIYFWTSVAFRDAKDIFNWPPIFFNFQPTVRNFEQVFGISLGFGYGSQEAVTPGGG
NFYMGPRLWDSIVVASLSTVLAIVVATLASYALSRMHFRGRHEFVNWVLSTRMMPPVAVAIPMFFIFKQFNLLDTYVGVI
LVHGLMNLPLAVLLLKSFFDDIPAEIDESALLDGASRWTIFRRIVLPMAKGGIAATAVLCFIFSWTEFLFVLTLTQTGLK
TVPVVSSTFVTSIGTAWGNMAALGAAAIVPAFIVVLLVQRHLVRGLTMGSLKQ

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=186, Percent_Identity=33.8709677419355, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=32.5471698113208, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=29.7794117647059, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32349; Mature: 32349

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]