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The map label for this gene is ycjO [C]

Identifier: 150397896

GI number: 150397896

Start: 2804943

End: 2805830

Strand: Reverse

Name: ycjO [C]

Synonym: Smed_2698

Alternate gene names: 150397896

Gene position: 2805830-2804943 (Counterclockwise)

Preceding gene: 150397897

Following gene: 150397895

Centisome position: 74.19

GC content: 61.15

Gene sequence:

>888_bases
ATGTCCATTGCACAGGTGAAACGCATCGCGATCTCGGACTCGCCGTGGCCGTGGCTCCTGCCGCTGATCGCGCTCCTCGC
CGTCTTCACCATCTATCCCTTCATCTACAATGTGTGGCTGAGCTTCCACGAATTTGTGCCGAAGAGCCGCGGACTGAAGT
TTGTCGGCTTCGCCAATTGGGTACAGCTGTGGAACGACGGCCGTTTCTGGGGCGCACTTGGCGTCACCTTCCTCTATTTC
GCCGTGGCCCTGACGATCGAGATCATCCTCGGCATGGCGATAGCGCTACTCCTGGACGCCGAACTGCCGGGCTTCGCAAT
GCTGCGCGCAGTGCTTTCGATGACGCTGGTCATCCCGCCGGCTATCGCCGGCATGATGTTTCTCCTGATGGAGGATTCGC
AGTTCGGGGCGCTCTCCTATCTGCTCGGCCTCGTCGGGCTGCTCGACAAGGCAACGCCCATGCTCGCCACCTCCTCGCTG
GCGCTGATCGGCGTGCTGATCGCCGAAATCTGGCAATGGACGCCGTTCATGGTGCTGATCTTCATGGCCGGGCTGCGCTC
GCTGCCGGCCGAGCCCTATGAGGCGGCGATGATCGACGGTGCCTCGTCGTTGCAGATGTTCCGCCGGCTGACGCTGCCGA
TGATGTCGCGCGTCATCGCCGTGGCGGTACTCCTGCGCGGCATCGATCTCTTCCGCGTCTTCGATTACGTCTTCGTGATG
ACTTCGGGAGGGCCAGGCACAGCGACCTATACCGTCAGCCTCTATGCATGGCAGCAGACCTTCTCGTTCCTGAAATGGGG
CTACGGGGCCACGCTGAGCCTGACGAGCCTGGTCATCGTCATGGTCATGGCCAACATATTCATCCGCGTTGCAAAGGTGA
GGTGGTAA

Upstream 100 bases:

>100_bases
AGGGGAGACGCCGGCGGTATCCGGATCGTCGCCGAATTATTGGAGGAACCGACCACAGGCGGGAGGACGCCGGCGGTGAG
GTCCCCGGGAGGAGAAGGCA

Downstream 100 bases:

>100_bases
CATGCAACAGAGCGCTCTCGCCCGCACGCTGCGCACCATTGCCGGTTGGCTCGTCGTCGGGGCATTCTTTTTCCCGATCT
ACTTCTGGACCTCGGTCGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSIAQVKRIAISDSPWPWLLPLIALLAVFTIYPFIYNVWLSFHEFVPKSRGLKFVGFANWVQLWNDGRFWGALGVTFLYF
AVALTIEIILGMAIALLLDAELPGFAMLRAVLSMTLVIPPAIAGMMFLLMEDSQFGALSYLLGLVGLLDKATPMLATSSL
ALIGVLIAEIWQWTPFMVLIFMAGLRSLPAEPYEAAMIDGASSLQMFRRLTLPMMSRVIAVAVLLRGIDLFRVFDYVFVM
TSGGPGTATYTVSLYAWQQTFSFLKWGYGATLSLTSLVIVMVMANIFIRVAKVRW

Sequences:

>Translated_295_residues
MSIAQVKRIAISDSPWPWLLPLIALLAVFTIYPFIYNVWLSFHEFVPKSRGLKFVGFANWVQLWNDGRFWGALGVTFLYF
AVALTIEIILGMAIALLLDAELPGFAMLRAVLSMTLVIPPAIAGMMFLLMEDSQFGALSYLLGLVGLLDKATPMLATSSL
ALIGVLIAEIWQWTPFMVLIFMAGLRSLPAEPYEAAMIDGASSLQMFRRLTLPMMSRVIAVAVLLRGIDLFRVFDYVFVM
TSGGPGTATYTVSLYAWQQTFSFLKWGYGATLSLTSLVIVMVMANIFIRVAKVRW
>Mature_294_residues
SIAQVKRIAISDSPWPWLLPLIALLAVFTIYPFIYNVWLSFHEFVPKSRGLKFVGFANWVQLWNDGRFWGALGVTFLYFA
VALTIEIILGMAIALLLDAELPGFAMLRAVLSMTLVIPPAIAGMMFLLMEDSQFGALSYLLGLVGLLDKATPMLATSSLA
LIGVLIAEIWQWTPFMVLIFMAGLRSLPAEPYEAAMIDGASSLQMFRRLTLPMMSRVIAVAVLLRGIDLFRVFDYVFVMT
SGGPGTATYTVSLYAWQQTFSFLKWGYGATLSLTSLVIVMVMANIFIRVAKVRW

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=252, Percent_Identity=27.7777777777778, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=25.9515570934256, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790465, Length=230, Percent_Identity=26.0869565217391, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32821; Mature: 32690

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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ECCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIAQVKRIAISDSPWPWLLPLIALLAVFTIYPFIYNVWLSFHEFVPKSRGLKFVGFANW
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEHHHH
VQLWNDGRFWGALGVTFLYFAVALTIEIILGMAIALLLDAELPGFAMLRAVLSMTLVIPP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AIAGMMFLLMEDSQFGALSYLLGLVGLLDKATPMLATSSLALIGVLIAEIWQWTPFMVLI
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FMAGLRSLPAEPYEAAMIDGASSLQMFRRLTLPMMSRVIAVAVLLRGIDLFRVFDYVFVM
HHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
TSGGPGTATYTVSLYAWQQTFSFLKWGYGATLSLTSLVIVMVMANIFIRVAKVRW
ECCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]