Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 150397894

GI number: 150397894

Start: 2802494

End: 2803990

Strand: Reverse

Name: ycjN [C]

Synonym: Smed_2696

Alternate gene names: 150397894

Gene position: 2803990-2802494 (Counterclockwise)

Preceding gene: 150397895

Following gene: 150397893

Centisome position: 74.14

GC content: 61.99

Gene sequence:

>1497_bases
ATGAAAGAGAAAGACAGAAAGTTTTATCTCGCGTCTGTGACCGACCGCTTCGTCCGCGGCCAGATGGACCGCCGCAGCTT
CCTGCGTACGGCCGGTACGCTCGGCCTCGGCGCAACCGCGCTCGGGATGGGCTTCGGCAGCCGGCCCTTCGGGGTGAGCC
GGGCGCTTGCCCAGGAACAGCTCGAGCCGTCCGCCGAAGTGATCTCCTGGCTCAAGGACGTCGCCAAACCGTTTGCGGGG
ACGACGCTGAAGCTGGCGACGGAATCGACCCCGCCGTCGAACGCCATCAACTCCCAGCTTAAGAAATATTTCGAGGAAGC
GACCGGCATCAGGGTCGAGATCGAGGTCCTGCCGCTTGAGCAGGTTCTGCAGAAGCTGACACTCGATGTCGCCTCCTCAC
TTGGCAGCTATGACCTCTACTATATCGACCAGAGCTGGTCGGCATCTTTCAGCCAGGACGTGTTCGATCCGCGCGAGCAG
CTTCAGGAAAAGCCGGATCTCGCCATGCCGAACTACAATATCGATGACTTCATGCCTGCGCTCGTCGACGGGATCGCCAA
ATACGAGGACCGTTGGGTCGGCGTACCCTACGACATCCCCATCTTCATCATGATCTACCGCAAGGACATCTACGAGAAGC
TCGGCCTCAAGGCTCCGGCAACATTCGAGGATCTGCTGAACAATTCCGTCACCATCACCAAGGAAATGGGACCGAACCTC
TATGGCTACGCCGGTCAGATGAAGTCCGGCCACTACGCGCTGGAATGCGAATGGACTTCCATGCTCTGGGGCAATGGCGG
CTCGATCTTCAATGCCGACAAGAAGTTCGTGGGCAATGACGAGCGGGGCATTGCCGCGCTCGACTACTATACCAAGCTCA
AGGAAACCATGCCGCCGGGCGTGGATCAGTGGACCTGGGACGGTCAGGGCCAGGCGATCGCTCAGGGCGTTGCCGCCTCG
ATGCTTTCCTGGGGCGAGTTCTTCCCCTACTTCGACGATGCCAGCCAGACCAAGGTTTCCGGCCTCTGCGAGGCGGTCGT
TCCGCCGCAGCCGGTGGCGCTCAGGAAACCCGAAGAATGCGGGTATGGCGAAATTCCCGGCACCGGCCACCAGGGCGGCT
CGTCACTCGCGGTGTCCAGATACTCCAAGAGCCCGGATGCGGCATGGATCTTCATGCAGTGGGCGACTTGCGCCGACACG
CAGGCCCTCATCACCACGCTCGGCGGCGGTACCGGCCCCACCCGCGCCTCTGTCTATGACGACCCGCGCGTCAAGGCAAA
TGCCCGCGTCGGCGCCGGCACGACCCGCCACCTGTCGGTCGTCCGCGAGACCATCGACAAATATATGGGCTCGGAGCCGG
ACCTGCCGGAATGGGCCCAGCTGTCGAGCGATACAATTCCCGTGGGCCTCGGCAAGTACTTCGCCGGCAGCTACGGCTCC
TCCAAGGAAGCGATGGACGACATCGCCTCTCAGGTCGAGACCGTGCTGAAGGGCTGA

Upstream 100 bases:

>100_bases
TGGTCTGACGATGGGGTCTCTGAAGCAGTGAGAATGCGGCGCCTGCGCCGACAACAGGAGAGATCGGGGCCACTTCCGGC
GTCGATCGAGGAGGAGAGAC

Downstream 100 bases:

>100_bases
TCCTGCATATGGGCGGGGCGCTGTAGCGGCGCCCCTTCCGGCCGGACATGACGAAAGACAGGAGGACCACCATGCCCGAC
AAACCGCTGATCGCGATCAC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MKEKDRKFYLASVTDRFVRGQMDRRSFLRTAGTLGLGATALGMGFGSRPFGVSRALAQEQLEPSAEVISWLKDVAKPFAG
TTLKLATESTPPSNAINSQLKKYFEEATGIRVEIEVLPLEQVLQKLTLDVASSLGSYDLYYIDQSWSASFSQDVFDPREQ
LQEKPDLAMPNYNIDDFMPALVDGIAKYEDRWVGVPYDIPIFIMIYRKDIYEKLGLKAPATFEDLLNNSVTITKEMGPNL
YGYAGQMKSGHYALECEWTSMLWGNGGSIFNADKKFVGNDERGIAALDYYTKLKETMPPGVDQWTWDGQGQAIAQGVAAS
MLSWGEFFPYFDDASQTKVSGLCEAVVPPQPVALRKPEECGYGEIPGTGHQGGSSLAVSRYSKSPDAAWIFMQWATCADT
QALITTLGGGTGPTRASVYDDPRVKANARVGAGTTRHLSVVRETIDKYMGSEPDLPEWAQLSSDTIPVGLGKYFAGSYGS
SKEAMDDIASQVETVLKG

Sequences:

>Translated_498_residues
MKEKDRKFYLASVTDRFVRGQMDRRSFLRTAGTLGLGATALGMGFGSRPFGVSRALAQEQLEPSAEVISWLKDVAKPFAG
TTLKLATESTPPSNAINSQLKKYFEEATGIRVEIEVLPLEQVLQKLTLDVASSLGSYDLYYIDQSWSASFSQDVFDPREQ
LQEKPDLAMPNYNIDDFMPALVDGIAKYEDRWVGVPYDIPIFIMIYRKDIYEKLGLKAPATFEDLLNNSVTITKEMGPNL
YGYAGQMKSGHYALECEWTSMLWGNGGSIFNADKKFVGNDERGIAALDYYTKLKETMPPGVDQWTWDGQGQAIAQGVAAS
MLSWGEFFPYFDDASQTKVSGLCEAVVPPQPVALRKPEECGYGEIPGTGHQGGSSLAVSRYSKSPDAAWIFMQWATCADT
QALITTLGGGTGPTRASVYDDPRVKANARVGAGTTRHLSVVRETIDKYMGSEPDLPEWAQLSSDTIPVGLGKYFAGSYGS
SKEAMDDIASQVETVLKG
>Mature_498_residues
MKEKDRKFYLASVTDRFVRGQMDRRSFLRTAGTLGLGATALGMGFGSRPFGVSRALAQEQLEPSAEVISWLKDVAKPFAG
TTLKLATESTPPSNAINSQLKKYFEEATGIRVEIEVLPLEQVLQKLTLDVASSLGSYDLYYIDQSWSASFSQDVFDPREQ
LQEKPDLAMPNYNIDDFMPALVDGIAKYEDRWVGVPYDIPIFIMIYRKDIYEKLGLKAPATFEDLLNNSVTITKEMGPNL
YGYAGQMKSGHYALECEWTSMLWGNGGSIFNADKKFVGNDERGIAALDYYTKLKETMPPGVDQWTWDGQGQAIAQGVAAS
MLSWGEFFPYFDDASQTKVSGLCEAVVPPQPVALRKPEECGYGEIPGTGHQGGSSLAVSRYSKSPDAAWIFMQWATCADT
QALITTLGGGTGPTRASVYDDPRVKANARVGAGTTRHLSVVRETIDKYMGSEPDLPEWAQLSSDTIPVGLGKYFAGSYGS
SKEAMDDIASQVETVLKG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 54616; Mature: 54616

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKDRKFYLASVTDRFVRGQMDRRSFLRTAGTLGLGATALGMGFGSRPFGVSRALAQEQ
CCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHH
LEPSAEVISWLKDVAKPFAGTTLKLATESTPPSNAINSQLKKYFEEATGIRVEIEVLPLE
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHH
QVLQKLTLDVASSLGSYDLYYIDQSWSASFSQDVFDPREQLQEKPDLAMPNYNIDDFMPA
HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHH
LVDGIAKYEDRWVGVPYDIPIFIMIYRKDIYEKLGLKAPATFEDLLNNSVTITKEMGPNL
HHHHHHHHCCCEECCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCC
YGYAGQMKSGHYALECEWTSMLWGNGGSIFNADKKFVGNDERGIAALDYYTKLKETMPPG
EEECCCCCCCCEEEEEEEEEEEECCCCCEECCCCHHCCCCCCCEEHHHHHHHHHHHCCCC
VDQWTWDGQGQAIAQGVAASMLSWGEFFPYFDDASQTKVSGLCEAVVPPQPVALRKPEEC
CCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
GYGEIPGTGHQGGSSLAVSRYSKSPDAAWIFMQWATCADTQALITTLGGGTGPTRASVYD
CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECHHCCHHHHHHHHCCCCCCCCCCCCC
DPRVKANARVGAGTTRHLSVVRETIDKYMGSEPDLPEWAQLSSDTIPVGLGKYFAGSYGS
CCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC
SKEAMDDIASQVETVLKG
CHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEKDRKFYLASVTDRFVRGQMDRRSFLRTAGTLGLGATALGMGFGSRPFGVSRALAQEQ
CCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHH
LEPSAEVISWLKDVAKPFAGTTLKLATESTPPSNAINSQLKKYFEEATGIRVEIEVLPLE
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHH
QVLQKLTLDVASSLGSYDLYYIDQSWSASFSQDVFDPREQLQEKPDLAMPNYNIDDFMPA
HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHH
LVDGIAKYEDRWVGVPYDIPIFIMIYRKDIYEKLGLKAPATFEDLLNNSVTITKEMGPNL
HHHHHHHHCCCEECCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCC
YGYAGQMKSGHYALECEWTSMLWGNGGSIFNADKKFVGNDERGIAALDYYTKLKETMPPG
EEECCCCCCCCEEEEEEEEEEEECCCCCEECCCCHHCCCCCCCEEHHHHHHHHHHHCCCC
VDQWTWDGQGQAIAQGVAASMLSWGEFFPYFDDASQTKVSGLCEAVVPPQPVALRKPEEC
CCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
GYGEIPGTGHQGGSSLAVSRYSKSPDAAWIFMQWATCADTQALITTLGGGTGPTRASVYD
CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECHHCCHHHHHHHHCCCCCCCCCCCCC
DPRVKANARVGAGTTRHLSVVRETIDKYMGSEPDLPEWAQLSSDTIPVGLGKYFAGSYGS
CCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC
SKEAMDDIASQVETVLKG
CHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]