BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is ydfG [C]

Identifier: 150397893

GI number: 150397893

Start: 2801697

End: 2802422

Strand: Reverse

Name: ydfG [C]

Synonym: Smed_2695

Alternate gene names: 150397893

Gene position: 2802422-2801697 (Counterclockwise)

Preceding gene: 150397894

Following gene: 150397892

Centisome position: 74.1

GC content: 63.22

Gene sequence:

>726_bases
ATGCCCGACAAACCGCTGATCGCGATCACTGGCGCCAGCTCCGGCATTGGCGAGGCCGTCGCGCGGGCCTTCTCCAGGGC
CGGGCATCCGCTTCTGCTGATCGCCCGCAGGCTCGACCGGCTCGAGGCGCTCGGCCTGCCCAACGCCTTGCTGAAGAAGG
CCGATGTCCGCGATCGCGCGGCACTTGCCGCCGCCGTGGGCGAGGCGGAGGCGAGGTTCGGCCCGGTCGACATGATGTTT
GCCAACGCCGGAATCGCGCGGCTTGGCGACATCGCCCGCCAGGCGCCCGAGGAATGGGACGAGATGATCGACATCAACAC
CAAGGGTGCGATGAACAGCGTGCATGCCGTGCTCTCGGGAATGATCGGGCGGAAGCACGGAACACTTGTAATGATGAGCT
CGATTGCAGGGCGCAAGGTCTATCCGGACCATACGGTCTATTGCGGCACGAAGTTCTTCGTCCACGCGGTCTCGGAAAGT
CTGCGCGAATATCTGGCACCGCACGACGTGCGCGTTATCGTGGTCTCCCCCGGCATTATCGATACGGAAGTGCTGGATCA
TGTGAAGGACGAGACGACGCTCGCCAATTACAAGGCGAACAAAGCGGCGATCGGCGGCGGCATTTCCGCCGACGTCGTCG
CAGATCTCATCCTCGACGCCTATCAGCTGCCGCAGCGAGCGATCGTCCAGGAAATCGTCATCACGCCGACCCGACAGAAA
TACTGA

Upstream 100 bases:

>100_bases
CTCAGGTCGAGACCGTGCTGAAGGGCTGATCCTGCATATGGGCGGGGCGCTGTAGCGGCGCCCCTTCCGGCCGGACATGA
CGAAAGACAGGAGGACCACC

Downstream 100 bases:

>100_bases
CACAGCGGAGCCGCCGTCGGCGCGACGGAAGGCCTGAACGAAGAATGGAGTAACGACCGATGGCGACCGTGGAATATCAA
CGAATTGGCAAGTCCTTCGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPDKPLIAITGASSGIGEAVARAFSRAGHPLLLIARRLDRLEALGLPNALLKKADVRDRAALAAAVGEAEARFGPVDMMF
ANAGIARLGDIARQAPEEWDEMIDINTKGAMNSVHAVLSGMIGRKHGTLVMMSSIAGRKVYPDHTVYCGTKFFVHAVSES
LREYLAPHDVRVIVVSPGIIDTEVLDHVKDETTLANYKANKAAIGGGISADVVADLILDAYQLPQRAIVQEIVITPTRQK
Y

Sequences:

>Translated_241_residues
MPDKPLIAITGASSGIGEAVARAFSRAGHPLLLIARRLDRLEALGLPNALLKKADVRDRAALAAAVGEAEARFGPVDMMF
ANAGIARLGDIARQAPEEWDEMIDINTKGAMNSVHAVLSGMIGRKHGTLVMMSSIAGRKVYPDHTVYCGTKFFVHAVSES
LREYLAPHDVRVIVVSPGIIDTEVLDHVKDETTLANYKANKAAIGGGISADVVADLILDAYQLPQRAIVQEIVITPTRQK
Y
>Mature_240_residues
PDKPLIAITGASSGIGEAVARAFSRAGHPLLLIARRLDRLEALGLPNALLKKADVRDRAALAAAVGEAEARFGPVDMMFA
NAGIARLGDIARQAPEEWDEMIDINTKGAMNSVHAVLSGMIGRKHGTLVMMSSIAGRKVYPDHTVYCGTKFFVHAVSESL
REYLAPHDVRVIVVSPGIIDTEVLDHVKDETTLANYKANKAAIGGGISADVVADLILDAYQLPQRAIVQEIVITPTRQKY

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=31.413612565445, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=31.413612565445, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=29.5336787564767, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=26.2948207171315, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=29.0816326530612, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7705925, Length=215, Percent_Identity=26.046511627907, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI32483357, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI223718074, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=30.2702702702703, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=25.2475247524752, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=30.8641975308642, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=38.2198952879581, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082160, Length=182, Percent_Identity=24.1758241758242, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789208, Length=190, Percent_Identity=24.7368421052632, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=28.0898876404494, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=204, Percent_Identity=31.8627450980392, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=204, Percent_Identity=31.8627450980392, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=29.9492385786802, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=189, Percent_Identity=26.4550264550265, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=33.0739299610895, Blast_Score=121, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6322067, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21358495, Length=232, Percent_Identity=29.3103448275862, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281364494, Length=258, Percent_Identity=28.2945736434109, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24663911, Length=250, Percent_Identity=30.4, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=29.2079207920792, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648944, Length=189, Percent_Identity=26.4550264550265, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=31.6872427983539, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24641232, Length=250, Percent_Identity=28, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24639444, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=27.3743016759777, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI116007234, Length=194, Percent_Identity=30.9278350515464, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007238, Length=189, Percent_Identity=27.5132275132275, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=26.8817204301075, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=195, Percent_Identity=25.1282051282051, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574402, Length=187, Percent_Identity=25.668449197861, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584744, Length=187, Percent_Identity=25.668449197861, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25874; Mature: 25743

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKPLIAITGASSGIGEAVARAFSRAGHPLLLIARRLDRLEALGLPNALLKKADVRDRA
CCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHH
ALAAAVGEAEARFGPVDMMFANAGIARLGDIARQAPEEWDEMIDINTKGAMNSVHAVLSG
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHH
MIGRKHGTLVMMSSIAGRKVYPDHTVYCGTKFFVHAVSESLREYLAPHDVRVIVVSPGII
HHCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
DTEVLDHVKDETTLANYKANKAAIGGGISADVVADLILDAYQLPQRAIVQEIVITPTRQK
CHHHHHHHHCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
Y
C
>Mature Secondary Structure 
PDKPLIAITGASSGIGEAVARAFSRAGHPLLLIARRLDRLEALGLPNALLKKADVRDRA
CCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHH
ALAAAVGEAEARFGPVDMMFANAGIARLGDIARQAPEEWDEMIDINTKGAMNSVHAVLSG
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHH
MIGRKHGTLVMMSSIAGRKVYPDHTVYCGTKFFVHAVSESLREYLAPHDVRVIVVSPGII
HHCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
DTEVLDHVKDETTLANYKANKAAIGGGISADVVADLILDAYQLPQRAIVQEIVITPTRQK
CHHHHHHHHCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA