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The map label for this gene is yafK [H]

Identifier: 150397767

GI number: 150397767

Start: 2665898

End: 2667343

Strand: Direct

Name: yafK [H]

Synonym: Smed_2569

Alternate gene names: 150397767

Gene position: 2665898-2667343 (Clockwise)

Preceding gene: 150397766

Following gene: 150397768

Centisome position: 70.49

GC content: 61.2

Gene sequence:

>1446_bases
ATGTGGCTAGAACGGGCTTTGCTGATGCGTTTCAGGAACCTTATCCTCACCGTCGCTGTCGCAGCCGCTCTTGCGGGCTG
CACCAACGAAACGCTCGATTCCGTAAACCTGTCCTCCGTCAAGAACAAGACCGAGTACCAGCTCTCCGGCAAGATGGTCA
GCAAGATGCGAGAGCTGGGGATGCAGAAGACATCCCCGATCCTGCTGCGCATTTTCAAGGAAGAAGGTACGCTGGAAGTC
TGGAAAGCGAACACGGCCAACCGCTTCCAGCTTTTGAAAAGCTATAAGATCTGCGCCTGGTCCGGTAAGCTTGGGCCGAA
GGTGAAGGAGGGAGACCGGCAGGCCCCGGAGGGCTTCTATCCGCTCTATCCGCGTCAGCTCAACCCCAATTCGAGCTATT
ATCTTGCCATCAATACCGGCTACCCGAACACCTATGACAAGGCCAACGGTCGCACCGGTACGCATCTGATGATCCATGGC
GCCTGCTCCTCGTCCGGCTGCTATTCGATGACGGACGAGCAGATCATCGAGATCTTCGCGCTCGCCCGCGATGCGTTCAA
AGGTGGTCAGGAAAGCGTGCAGCTGCAGGCCTTCCCTTTCCGCATGACGGCGGAGAACATGGCGCGCCACCGCGACAATC
CGAACATCGATTTCTGGAAAATGCTGAAGGTCGGCTACGACCAGTTCGAAGTGACCAAGCGCCCGCCGGCAGTGAATGTC
TGCGAGCGGAAATATGTCTTCAACCAGCAGTCCGAGGGCCAGTTCAACGCGACGGCCCAATGCCCGCCAATGTCGACACC
GCCGGCGCTGCAGATGGCTATGGCGAGCTACGACAAGGACTTCCGGCGCGACTACGAGAAGGCGTTGAAGAAATACCAGG
GCATGGTCTGGTACGAACCGACCGAAGCCGAGCGCAAGGCTGTTGTCGCCGATCAGCGCAAGGGGCGCGAGCTTGCCTAC
GCGCCGACCGGCAGCTCGCTCGATGCCGGCAAGCTGCTCAAGGTGAGCGAACTCGAAAAGAAGATCGCGGAGCAGAAAGA
GGCCGAGGAAGCCAAGCAGGCAGCCTTGATCCAGAAGGAAGCCCTGGAAAAGGCGGCCCGCGAAGGCAAGGGTCTGCCGG
TACCTCAGGCCAACCCGCTTGAGCGCTCTGTCGAGCAGGCAGCGGTGCAGCCGGAGCCTGCGAGTAAGTCGCTATGGGGT
CTTTTCTCCCGGAACGAGCCGAATGCCTCACCCGTGGCACCGACGGCCGCTTCTCCCGCGCCGCAGGCCCCGCCGCAACC
CGCCGCAAACGGGCAACAAGAAGTCCCGCCGGCGCAAGACAAGCCGCAGGTGGCCGCTGCTCCTGCGGCGAATGCGCAGG
CGCAGGCCGCCGAGCAGCCCGCGGTTGATCAGGCCCCGATCGATCAGCCGAAGAAGCGCCCGTTCTGGAAAATCTGGGGC
AATTGA

Upstream 100 bases:

>100_bases
CATTCGCAGGGGGCGCCTGCACGGTTAAGATTTCGTGAAGAATAATGACGTACTGATTCGTTGACGCCTGTCCTTCCTGG
AAGAGGCGTGCACGGATGGA

Downstream 100 bases:

>100_bases
TGCCCGAAGAGGCGAAATTGCGATACGATCTGAGGGGGCTGAAATGCCCCCTTCCCGTTTTGAAAACACGCAAGCGCATG
GAAAACATGACGGCTGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MWLERALLMRFRNLILTVAVAAALAGCTNETLDSVNLSSVKNKTEYQLSGKMVSKMRELGMQKTSPILLRIFKEEGTLEV
WKANTANRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFYPLYPRQLNPNSSYYLAINTGYPNTYDKANGRTGTHLMIHG
ACSSSGCYSMTDEQIIEIFALARDAFKGGQESVQLQAFPFRMTAENMARHRDNPNIDFWKMLKVGYDQFEVTKRPPAVNV
CERKYVFNQQSEGQFNATAQCPPMSTPPALQMAMASYDKDFRRDYEKALKKYQGMVWYEPTEAERKAVVADQRKGRELAY
APTGSSLDAGKLLKVSELEKKIAEQKEAEEAKQAALIQKEALEKAAREGKGLPVPQANPLERSVEQAAVQPEPASKSLWG
LFSRNEPNASPVAPTAASPAPQAPPQPAANGQQEVPPAQDKPQVAAAPAANAQAQAAEQPAVDQAPIDQPKKRPFWKIWG
N

Sequences:

>Translated_481_residues
MWLERALLMRFRNLILTVAVAAALAGCTNETLDSVNLSSVKNKTEYQLSGKMVSKMRELGMQKTSPILLRIFKEEGTLEV
WKANTANRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFYPLYPRQLNPNSSYYLAINTGYPNTYDKANGRTGTHLMIHG
ACSSSGCYSMTDEQIIEIFALARDAFKGGQESVQLQAFPFRMTAENMARHRDNPNIDFWKMLKVGYDQFEVTKRPPAVNV
CERKYVFNQQSEGQFNATAQCPPMSTPPALQMAMASYDKDFRRDYEKALKKYQGMVWYEPTEAERKAVVADQRKGRELAY
APTGSSLDAGKLLKVSELEKKIAEQKEAEEAKQAALIQKEALEKAAREGKGLPVPQANPLERSVEQAAVQPEPASKSLWG
LFSRNEPNASPVAPTAASPAPQAPPQPAANGQQEVPPAQDKPQVAAAPAANAQAQAAEQPAVDQAPIDQPKKRPFWKIWG
N
>Mature_481_residues
MWLERALLMRFRNLILTVAVAAALAGCTNETLDSVNLSSVKNKTEYQLSGKMVSKMRELGMQKTSPILLRIFKEEGTLEV
WKANTANRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFYPLYPRQLNPNSSYYLAINTGYPNTYDKANGRTGTHLMIHG
ACSSSGCYSMTDEQIIEIFALARDAFKGGQESVQLQAFPFRMTAENMARHRDNPNIDFWKMLKVGYDQFEVTKRPPAVNV
CERKYVFNQQSEGQFNATAQCPPMSTPPALQMAMASYDKDFRRDYEKALKKYQGMVWYEPTEAERKAVVADQRKGRELAY
APTGSSLDAGKLLKVSELEKKIAEQKEAEEAKQAALIQKEALEKAAREGKGLPVPQANPLERSVEQAAVQPEPASKSLWG
LFSRNEPNASPVAPTAASPAPQAPPQPAANGQQEVPPAQDKPQVAAAPAANAQAQAAEQPAVDQAPIDQPKKRPFWKIWG
N

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=185, Percent_Identity=51.3513513513513, Blast_Score=206, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 53315; Mature: 53315

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLERALLMRFRNLILTVAVAAALAGCTNETLDSVNLSSVKNKTEYQLSGKMVSKMRELG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHC
MQKTSPILLRIFKEEGTLEVWKANTANRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFY
CCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCC
PLYPRQLNPNSSYYLAINTGYPNTYDKANGRTGTHLMIHGACSSSGCYSMTDEQIIEIFA
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
LARDAFKGGQESVQLQAFPFRMTAENMARHRDNPNIDFWKMLKVGYDQFEVTKRPPAVNV
HHHHHHCCCCCCEEEEEECEEECHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCCH
CERKYVFNQQSEGQFNATAQCPPMSTPPALQMAMASYDKDFRRDYEKALKKYQGMVWYEP
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEECC
TEAERKAVVADQRKGRELAYAPTGSSLDAGKLLKVSELEKKIAEQKEAEEAKQAALIQKE
CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEKAAREGKGLPVPQANPLERSVEQAAVQPEPASKSLWGLFSRNEPNASPVAPTAASPA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
PQAPPQPAANGQQEVPPAQDKPQVAAAPAANAQAQAAEQPAVDQAPIDQPKKRPFWKIWG
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECC
N
C
>Mature Secondary Structure
MWLERALLMRFRNLILTVAVAAALAGCTNETLDSVNLSSVKNKTEYQLSGKMVSKMRELG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHC
MQKTSPILLRIFKEEGTLEVWKANTANRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFY
CCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCC
PLYPRQLNPNSSYYLAINTGYPNTYDKANGRTGTHLMIHGACSSSGCYSMTDEQIIEIFA
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
LARDAFKGGQESVQLQAFPFRMTAENMARHRDNPNIDFWKMLKVGYDQFEVTKRPPAVNV
HHHHHHCCCCCCEEEEEECEEECHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCCH
CERKYVFNQQSEGQFNATAQCPPMSTPPALQMAMASYDKDFRRDYEKALKKYQGMVWYEP
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEECC
TEAERKAVVADQRKGRELAYAPTGSSLDAGKLLKVSELEKKIAEQKEAEEAKQAALIQKE
CHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEKAAREGKGLPVPQANPLERSVEQAAVQPEPASKSLWGLFSRNEPNASPVAPTAASPA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
PQAPPQPAANGQQEVPPAQDKPQVAAAPAANAQAQAAEQPAVDQAPIDQPKKRPFWKIWG
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEECC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]