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The map label for this gene is comF [H]

Identifier: 150397708

GI number: 150397708

Start: 2607124

End: 2607900

Strand: Reverse

Name: comF [H]

Synonym: Smed_2510

Alternate gene names: 150397708

Gene position: 2607900-2607124 (Counterclockwise)

Preceding gene: 150397710

Following gene: 150397707

Centisome position: 68.96

GC content: 63.45

Gene sequence:

>777_bases
ATGGAATCAGACCAAGGTAGAGCTTCGATCAGAGATCGGGCAGGCCCGCTTCGCCGGCTTGCGGCCCTGGCGATCAATCT
CGTCTTCCCGCCGGTCTGCTGTGGATGCGGCCGGCTGACGGGCGATGCTCGTGCCGTCTGCCCCTCCTGCTGGGCGAAGA
TCCCGCTCATCGAACGGCCCTATTGCGAGGTTCTGGGCATGCCTTTCACCTTCGACCCGGGGGAGGGTGCAGTCTCGCCC
GAGGCAATCGCCAACCCTCCGGTCTTCGACAGGTTACGCTCCGCAGCGATTCACGAGGGGATCGTCCGTGATCTCGTGCA
CGGCCTGAAATATCGCGATCGGACCGACCTTGCACCAATGATGGCCGAATGGATGATTCGTGCAGGCGACGGTGCCGTCG
CAGCGGCGGATATGATCGTGCCGGTTCCGCTTCACGCATTCCGCCTCTGGAGGCGGAAGTTCAATCAGGCCGCGGAGCTC
GCACGGTTCGTTGCCAAGCATTCGGCAAGAACTTATCGGCCGGATGTCCTTCGCAGGACCAAACGCACGAGCCGGCAGGT
AGGCCTTGGCGCGAGGGCACGCGAAGCGAATGTACGCGGCGCATTCTCCGTTCCCGAAGGCCTGAGGCGGGAAGTCGCGG
GGAAACGCATCGTGCTCGTCGATGATGTCTATACGACAGGCGCGACCGTCACCGCGGCGGCCAGGGCCCTGAAGCGTGCG
GGGGCAGGCGACGTTACGGTTTTGACCTTTGCAATGGCGGTGTCCGGTCCTATATGA

Upstream 100 bases:

>100_bases
ACGTGCAAGGTCGCTGTAGCACTTGAGTTGCTGCATGTTTGTCCTTTAATCCGCTTCGACTAAAGGACAAACATGTAGTG
CCGCGGATAAAGTCAATCTC

Downstream 100 bases:

>100_bases
CAGGCAAAAGACATCCGGCGATCGATGCCGGCAAAGGAGCGGTTGGAGACTATGGCCTCGGTCGTCATTTATACGCGTCA
GTTCTGCGGCTATTGCACGA

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MESDQGRASIRDRAGPLRRLAALAINLVFPPVCCGCGRLTGDARAVCPSCWAKIPLIERPYCEVLGMPFTFDPGEGAVSP
EAIANPPVFDRLRSAAIHEGIVRDLVHGLKYRDRTDLAPMMAEWMIRAGDGAVAAADMIVPVPLHAFRLWRRKFNQAAEL
ARFVAKHSARTYRPDVLRRTKRTSRQVGLGARAREANVRGAFSVPEGLRREVAGKRIVLVDDVYTTGATVTAAARALKRA
GAGDVTVLTFAMAVSGPI

Sequences:

>Translated_258_residues
MESDQGRASIRDRAGPLRRLAALAINLVFPPVCCGCGRLTGDARAVCPSCWAKIPLIERPYCEVLGMPFTFDPGEGAVSP
EAIANPPVFDRLRSAAIHEGIVRDLVHGLKYRDRTDLAPMMAEWMIRAGDGAVAAADMIVPVPLHAFRLWRRKFNQAAEL
ARFVAKHSARTYRPDVLRRTKRTSRQVGLGARAREANVRGAFSVPEGLRREVAGKRIVLVDDVYTTGATVTAAARALKRA
GAGDVTVLTFAMAVSGPI
>Mature_258_residues
MESDQGRASIRDRAGPLRRLAALAINLVFPPVCCGCGRLTGDARAVCPSCWAKIPLIERPYCEVLGMPFTFDPGEGAVSP
EAIANPPVFDRLRSAAIHEGIVRDLVHGLKYRDRTDLAPMMAEWMIRAGDGAVAAADMIVPVPLHAFRLWRRKFNQAAEL
ARFVAKHSARTYRPDVLRRTKRTSRQVGLGARAREANVRGAFSVPEGLRREVAGKRIVLVDDVYTTGATVTAAARALKRA
GAGDVTVLTFAMAVSGPI

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=225, Percent_Identity=29.7777777777778, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27984; Mature: 27984

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESDQGRASIRDRAGPLRRLAALAINLVFPPVCCGCGRLTGDARAVCPSCWAKIPLIERP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHCCCCCCCC
YCEVLGMPFTFDPGEGAVSPEAIANPPVFDRLRSAAIHEGIVRDLVHGLKYRDRTDLAPM
HHHHHCCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MAEWMIRAGDGAVAAADMIVPVPLHAFRLWRRKFNQAAELARFVAKHSARTYRPDVLRRT
HHHHHHHCCCCCEEHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KRTSRQVGLGARAREANVRGAFSVPEGLRREVAGKRIVLVDDVYTTGATVTAAARALKRA
HHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
GAGDVTVLTFAMAVSGPI
CCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MESDQGRASIRDRAGPLRRLAALAINLVFPPVCCGCGRLTGDARAVCPSCWAKIPLIERP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHCCCCCCCC
YCEVLGMPFTFDPGEGAVSPEAIANPPVFDRLRSAAIHEGIVRDLVHGLKYRDRTDLAPM
HHHHHCCCCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MAEWMIRAGDGAVAAADMIVPVPLHAFRLWRRKFNQAAELARFVAKHSARTYRPDVLRRT
HHHHHHHCCCCCEEHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KRTSRQVGLGARAREANVRGAFSVPEGLRREVAGKRIVLVDDVYTTGATVTAAARALKRA
HHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
GAGDVTVLTFAMAVSGPI
CCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]