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The map label for this gene is ydiF [H]

Identifier: 150397703

GI number: 150397703

Start: 2602890

End: 2604410

Strand: Direct

Name: ydiF [H]

Synonym: Smed_2505

Alternate gene names: 150397703

Gene position: 2602890-2604410 (Clockwise)

Preceding gene: 150397696

Following gene: 150397704

Centisome position: 68.82

GC content: 61.21

Gene sequence:

>1521_bases
ATGGCCCTGATCACGACAAGAAATCTCGGTGTCACTATGGGTGCGCCGCTCTTTTCGCAACTTGACCTCGCAATCTCGCC
CGGCGATCGCATCGGCATCGTCGCCGCCAATGGCAGAGGAAAATCGACCCTTCTGAGATGCATCGCCGGCGCGCTCGATG
CGACAACCGGCGACGTCATTCGCGCACGAGGCCTGCGCATCGGTCATGTCGAGCAGTCGATCCCGCCCGGCCTTTCTGAA
ATTCGGTTCCGCGACGCAGTCCGCCAGGCATTGCCGGACGAACAGGCCCAAACGGAGGACTGGCGGGTTGACGTCGCCTT
GGACTCACTCGACGTTCCGCAGGCGCTGCGTCAACGGCCGATCGGACGATTGAGCGGCGGCTGGCAAGGATTGGCGCTGC
TTGCACGTGTCTTCGTTACCGACCCGGACGCGCTGCTTCTGGACGAGCCGACGAACCACCTGGATCTTGAAAAAATCCTC
AGGCTCGAGACGTGGCTCCTGAACCTACCCCGTGACATGCCGGTGCTGATCGCGAGCCACGATCGGGCGTTTCTTGATGC
GACCACCAATCGGACGTTGTTTCTGCGCGCGGAGCAGTCGTACGCGTTTTCGCTGCCCTATTCGCGGGCACGAAACGCAT
TGGACGAGATCGACGCTTCCGACGAGCGACGGTACCGAAAGGACATGAAAACGGTTCAGCAGCTTCGCCGCCAGGCAGCC
AAGCTCAATAATATCGGCATCAATTCCGGCAGCGACCTGCTGACGGTAAAGACGAAACAAATTCGTCAAAGGGCAGAACG
GCTGGAGGATGCTGCACGCCCCGCCTTTCACGAGCGATCGTCCGGCGCGATCCGGCTCGCCAATCGGGGCACGCACGCCA
AGGTTCTCATCACGCTCGACGATACGCCGGTTGAAACGCCGCAGGGAACTTTGCTGTTCAGGACGGGCAGGCAATGGATT
CGCCATGGTGACCGGATCGTTCTTCTCGGTCGAAATGGTGCGGGCAAGTCGCGCCTCGTCCATCTGATCAGGACTGCGAT
CGCAGAGCCGGAAAATCCGGAGGCAACGATCAAGGCGACGCCATCATTGATGCTCGGTTACAGCGATCAGGCGCTCGCAG
AACTCGCGGGCGATGAGACGCCGCTCACTACGATAACGCGGCGCTTCGAGATCGGCGACCAACGCGCCCGCACCCTGCTG
GTCGGCGCCGGCCTCGGGATCGAGCTGCAAACTCGCCCCGTCGGCGTTCTTTCCGGCGGGCAGAAGTCCCGCTTGGCAAT
GCTCGTGCTGAGGCTCACCAATCCGAACTTCTATCTGCTCGACGAACCAACCAACCATCTCGACATCGAGGGCCAGGAGG
CCCTGGAAACGGAGTTGACGGCGCAGAAAGCGAGTTGCCTGCTGGTGTCGCACGACCGCAGTTTCGCGCGGGCAGTCGGC
AACCGTTTCTGGCTGATCGAGAATCGCCGTTTGCTTGAAGTCGGCGATCCCGATGACTTCTTCAAAGGCCTTCGTGAGTG
A

Upstream 100 bases:

>100_bases
GTTCCAGCGCGTCGCATATCGTCACCAACCCAGCAGCAGCACTTCAACGATGCGCGGCCCGCATCGGGCTTGAGCTGCTC
GGGCAGTCCAGAGAACGACA

Downstream 100 bases:

>100_bases
CGCCGAAATAAAACCACTCGCGTAACTGAACTGGTTTTTCAACGCTGGAGCTTGACAGGCAAGGGCGGAAGCCCTTGCCT
GTCGGAACGGCAATGCGCAA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MALITTRNLGVTMGAPLFSQLDLAISPGDRIGIVAANGRGKSTLLRCIAGALDATTGDVIRARGLRIGHVEQSIPPGLSE
IRFRDAVRQALPDEQAQTEDWRVDVALDSLDVPQALRQRPIGRLSGGWQGLALLARVFVTDPDALLLDEPTNHLDLEKIL
RLETWLLNLPRDMPVLIASHDRAFLDATTNRTLFLRAEQSYAFSLPYSRARNALDEIDASDERRYRKDMKTVQQLRRQAA
KLNNIGINSGSDLLTVKTKQIRQRAERLEDAARPAFHERSSGAIRLANRGTHAKVLITLDDTPVETPQGTLLFRTGRQWI
RHGDRIVLLGRNGAGKSRLVHLIRTAIAEPENPEATIKATPSLMLGYSDQALAELAGDETPLTTITRRFEIGDQRARTLL
VGAGLGIELQTRPVGVLSGGQKSRLAMLVLRLTNPNFYLLDEPTNHLDIEGQEALETELTAQKASCLLVSHDRSFARAVG
NRFWLIENRRLLEVGDPDDFFKGLRE

Sequences:

>Translated_506_residues
MALITTRNLGVTMGAPLFSQLDLAISPGDRIGIVAANGRGKSTLLRCIAGALDATTGDVIRARGLRIGHVEQSIPPGLSE
IRFRDAVRQALPDEQAQTEDWRVDVALDSLDVPQALRQRPIGRLSGGWQGLALLARVFVTDPDALLLDEPTNHLDLEKIL
RLETWLLNLPRDMPVLIASHDRAFLDATTNRTLFLRAEQSYAFSLPYSRARNALDEIDASDERRYRKDMKTVQQLRRQAA
KLNNIGINSGSDLLTVKTKQIRQRAERLEDAARPAFHERSSGAIRLANRGTHAKVLITLDDTPVETPQGTLLFRTGRQWI
RHGDRIVLLGRNGAGKSRLVHLIRTAIAEPENPEATIKATPSLMLGYSDQALAELAGDETPLTTITRRFEIGDQRARTLL
VGAGLGIELQTRPVGVLSGGQKSRLAMLVLRLTNPNFYLLDEPTNHLDIEGQEALETELTAQKASCLLVSHDRSFARAVG
NRFWLIENRRLLEVGDPDDFFKGLRE
>Mature_505_residues
ALITTRNLGVTMGAPLFSQLDLAISPGDRIGIVAANGRGKSTLLRCIAGALDATTGDVIRARGLRIGHVEQSIPPGLSEI
RFRDAVRQALPDEQAQTEDWRVDVALDSLDVPQALRQRPIGRLSGGWQGLALLARVFVTDPDALLLDEPTNHLDLEKILR
LETWLLNLPRDMPVLIASHDRAFLDATTNRTLFLRAEQSYAFSLPYSRARNALDEIDASDERRYRKDMKTVQQLRRQAAK
LNNIGINSGSDLLTVKTKQIRQRAERLEDAARPAFHERSSGAIRLANRGTHAKVLITLDDTPVETPQGTLLFRTGRQWIR
HGDRIVLLGRNGAGKSRLVHLIRTAIAEPENPEATIKATPSLMLGYSDQALAELAGDETPLTTITRRFEIGDQRARTLLV
GAGLGIELQTRPVGVLSGGQKSRLAMLVLRLTNPNFYLLDEPTNHLDIEGQEALETELTAQKASCLLVSHDRSFARAVGN
RFWLIENRRLLEVGDPDDFFKGLRE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=531, Percent_Identity=28.060263653484, Blast_Score=165, Evalue=1e-40,
Organism=Homo sapiens, GI69354671, Length=522, Percent_Identity=27.0114942528736, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI10947135, Length=522, Percent_Identity=27.0114942528736, Blast_Score=148, Evalue=2e-35,
Organism=Homo sapiens, GI27881506, Length=520, Percent_Identity=25.7692307692308, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI10947137, Length=520, Percent_Identity=25.7692307692308, Blast_Score=139, Evalue=6e-33,
Organism=Escherichia coli, GI1787041, Length=543, Percent_Identity=27.255985267035, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1789751, Length=514, Percent_Identity=28.5992217898833, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1787182, Length=531, Percent_Identity=26.1770244821092, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI2367384, Length=507, Percent_Identity=27.6134122287968, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559834, Length=545, Percent_Identity=27.8899082568807, Blast_Score=176, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17553372, Length=532, Percent_Identity=25.7518796992481, Blast_Score=136, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17555318, Length=531, Percent_Identity=25.6120527306968, Blast_Score=134, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=28.2097649186257, Blast_Score=150, Evalue=6e-37,
Organism=Saccharomyces cerevisiae, GI6320874, Length=509, Percent_Identity=24.75442043222, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=174, Percent_Identity=37.9310344827586, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324314, Length=387, Percent_Identity=26.8733850129199, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323278, Length=173, Percent_Identity=32.3699421965318, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=27.5280898876405, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI24666836, Length=531, Percent_Identity=27.8719397363465, Blast_Score=151, Evalue=9e-37,
Organism=Drosophila melanogaster, GI24642252, Length=522, Percent_Identity=25.8620689655172, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI18859989, Length=522, Percent_Identity=25.8620689655172, Blast_Score=131, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 56078; Mature: 55947

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALITTRNLGVTMGAPLFSQLDLAISPGDRIGIVAANGRGKSTLLRCIAGALDATTGDVI
CEEEEECCCCEEECCCHHHCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHH
RARGLRIGHVEQSIPPGLSEIRFRDAVRQALPDEQAQTEDWRVDVALDSLDVPQALRQRP
HHCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHCC
IGRLSGGWQGLALLARVFVTDPDALLLDEPTNHLDLEKILRLETWLLNLPRDMPVLIASH
CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
DRAFLDATTNRTLFLRAEQSYAFSLPYSRARNALDEIDASDERRYRKDMKTVQQLRRQAA
CCEEEEECCCCEEEEEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KLNNIGINSGSDLLTVKTKQIRQRAERLEDAARPAFHERSSGAIRLANRGTHAKVLITLD
HHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCEEEEEEEC
DTPVETPQGTLLFRTGRQWIRHGDRIVLLGRNGAGKSRLVHLIRTAIAEPENPEATIKAT
CCCCCCCCCEEEECCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEC
PSLMLGYSDQALAELAGDETPLTTITRRFEIGDQRARTLLVGAGLGIELQTRPVGVLSGG
CCEEECCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCEEEECCC
QKSRLAMLVLRLTNPNFYLLDEPTNHLDIEGQEALETELTAQKASCLLVSHDRSFARAVG
CCCCEEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHHC
NRFWLIENRRLLEVGDPDDFFKGLRE
CEEEEEECCEEEEECCCHHHHHHHCC
>Mature Secondary Structure 
ALITTRNLGVTMGAPLFSQLDLAISPGDRIGIVAANGRGKSTLLRCIAGALDATTGDVI
EEEEECCCCEEECCCHHHCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHH
RARGLRIGHVEQSIPPGLSEIRFRDAVRQALPDEQAQTEDWRVDVALDSLDVPQALRQRP
HHCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHCC
IGRLSGGWQGLALLARVFVTDPDALLLDEPTNHLDLEKILRLETWLLNLPRDMPVLIASH
CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
DRAFLDATTNRTLFLRAEQSYAFSLPYSRARNALDEIDASDERRYRKDMKTVQQLRRQAA
CCEEEEECCCCEEEEEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KLNNIGINSGSDLLTVKTKQIRQRAERLEDAARPAFHERSSGAIRLANRGTHAKVLITLD
HHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCEEEEEEEC
DTPVETPQGTLLFRTGRQWIRHGDRIVLLGRNGAGKSRLVHLIRTAIAEPENPEATIKAT
CCCCCCCCCEEEECCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEC
PSLMLGYSDQALAELAGDETPLTTITRRFEIGDQRARTLLVGAGLGIELQTRPVGVLSGG
CCEEECCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCEEEECCC
QKSRLAMLVLRLTNPNFYLLDEPTNHLDIEGQEALETELTAQKASCLLVSHDRSFARAVG
CCCCEEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHHC
NRFWLIENRRLLEVGDPDDFFKGLRE
CEEEEEECCEEEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]