Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 150397696

GI number: 150397696

Start: 2590558

End: 2592498

Strand: Direct

Name: yebA [C]

Synonym: Smed_2498

Alternate gene names: 150397696

Gene position: 2590558-2592498 (Clockwise)

Preceding gene: 150397693

Following gene: 150397703

Centisome position: 68.5

GC content: 62.34

Gene sequence:

>1941_bases
ATGAGCAGCGATAAGAACATGCTTCGTTCGCTTGGCGACCACCCGCCGATCCTTGCGGACGGCCGTCGGGCGCCGGATCG
GCGCGAGATTTCGCTGCGCTGGCTCTCGGGCACGTTCTTGACCGGTATCACATCGAGCCTTCTTATGGGCGTCGCGCTCT
TTGCCGCCCTCGACGGCCGTCAGCAACTGGCGATCCCGGCGGAAGCCTTCGCCGCGCTCGCCCCCTCCGCGCCCGCTGGC
GCCGCCAAACGTGGAGACCGCGTCCTTTCACCCAACATCGTCGCCAAGCCGGCCGACAAGACCGTGATGGAAGTCTCGAC
AATGATCCATGACGGCGAAAAAGAGGTGGTGCGCCGTCAGCCTTTCGTGCACGTGAAAATGGCGCTTGCGGCCAACCACC
AGACGTCCGAGTCCTATCCCGACTTCGACCCGCTGGCCATCTTCTCCACGGATGAGGCGGACGCCGAGGCGGCGCCGGCA
AAGACCGGCACGATCTACGGCTCGGACGTCGAGTCCGAGGTTGCGCTGAAGACCGTTGACTTTCCGCTCGATGGCGGCGG
CTTCAAAGTCGGACCGTCGATGTCGCTCGACGAGGTGGAGGAGAATGTCCGCACCAACGGTTCGGTGCTGACCGAGGGCA
GCACCCAGGTCGCCTCGCTCTTCTATGTCGACCCCCAGCGCTTTGCGTCCGACGCCGACAATCTCGACCTGATGCAGGGC
CTTGCCGCGCGCGTCGTCGAGGAGAATATGAGCGTCTCCTCCTATGAGAACATCACCAAGCAAAGCACCGAATACGCCGA
CGACATCATACCGGTACGCCGCGCACTGCCCATTGCGAAGGTGATGACCAATGCCGGCTATGCCGAAGCCCAGGCCGAGG
ACGCAGCCGGCTATCTCGGCGAAGCGCTCGGCGCCAAGAATCTTGGCCCCGGCGACGTGCTACGCATTGGCATTATTCAA
AAGGGCGAGGAAGCAAAGATCGTCCGCGCGACGATCTATTCGAACAGCCGGCACGTCCTGACCATGGCGGTGGACGACCG
CGGCCGTTTCGTTCCCGGCGCCGAGCCCCCGAAGCTCGAAGCGGTAGCCGCTGCCTTCGACGACACCGGCAGGCCGGTGA
TCTCAAGCAGCCACGACCTGCCTCGGGTTTATGACGGAATCTATCGTGCAGCCCTATCCTACGGAATGAACGCCGATATG
ATCGCGCTCGTCGTCAAGCTCTTGGCGAGCAACGTCGATTTCCAGGCCCAACTGAAGCCGGCGGATTCGCTCGAAGCCTT
TTTCTCCGTTACCGATGAAAGCGGCCGGGCAACGGAAGATTCTGAACTGCTCTACGTCAATGCCAAATTCGGCGACGCCG
AGACACGGTTCTATCGCTTCCAGGATCCGGACGATAATTCGATCGACTATTTCGACAAGGACGGCAAGAGCATCCGCCAG
TTCCTGCTTCGCAACCCCGTTCCGAACGGTCGTTTCCGCTCCGGCTTCGGAATGCGTCGCCACCCGATTCTCGGCTTCTC
ACGCATGCACACGGGCGTCGATTGGTCAGCCCCGCGCGGCACGCCGATCATCGCCGCCGGCAATGGCGTCGTGCAGAAGG
CCGGCTGGGATTCCGGCGGCTATGGCAACCAGACCCTCATCCGCCACGCCAACGGCTACGTCTCGTCCTATAACCACCAA
AGCGCAATTGCCAAAAGCGTCAAGCCGGGGGCAAAGGTGGTCCAGGGCCAGGTGATCGGCTGGGTCGGCACGACCGGCCT
TTCGACCGGTCCACACCTCCATTACGAACTGATCGTCAATGGCAACAAGGTGGACCCCTTGCGCATTCGGCTGCCGGGCG
GCAAATCGCTTGCCGGAGAAGCCTTGGCGCAATTCGAAAAGGAACGCGAACGCATCGACGAGCTTCTCGGCGACGATGCG
AACGAAGTCGCAAGCAAGTAG

Upstream 100 bases:

>100_bases
GCGCCGTGATTTGACTTCCGTGCACGGAAGATGCACACCTTCGCGCAACGTATCGGCGATAAGTATACGGAAAGAGCATT
CTAGGGGGCCTCCAGCCTGC

Downstream 100 bases:

>100_bases
GCGCCCAGTAACGGCATGGCGGGCTCGTACAAAAATGGGCCGCCCTGCAGGGCGGCCCTCATGTCGAAATGCGCAGTTTA
CGCGGCTTCTTTGTCCGTCC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MSSDKNMLRSLGDHPPILADGRRAPDRREISLRWLSGTFLTGITSSLLMGVALFAALDGRQQLAIPAEAFAALAPSAPAG
AAKRGDRVLSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQPFVHVKMALAANHQTSESYPDFDPLAIFSTDEADAEAAPA
KTGTIYGSDVESEVALKTVDFPLDGGGFKVGPSMSLDEVEENVRTNGSVLTEGSTQVASLFYVDPQRFASDADNLDLMQG
LAARVVEENMSVSSYENITKQSTEYADDIIPVRRALPIAKVMTNAGYAEAQAEDAAGYLGEALGAKNLGPGDVLRIGIIQ
KGEEAKIVRATIYSNSRHVLTMAVDDRGRFVPGAEPPKLEAVAAAFDDTGRPVISSSHDLPRVYDGIYRAALSYGMNADM
IALVVKLLASNVDFQAQLKPADSLEAFFSVTDESGRATEDSELLYVNAKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQ
FLLRNPVPNGRFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGGYGNQTLIRHANGYVSSYNHQ
SAIAKSVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVNGNKVDPLRIRLPGGKSLAGEALAQFEKERERIDELLGDDA
NEVASK

Sequences:

>Translated_646_residues
MSSDKNMLRSLGDHPPILADGRRAPDRREISLRWLSGTFLTGITSSLLMGVALFAALDGRQQLAIPAEAFAALAPSAPAG
AAKRGDRVLSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQPFVHVKMALAANHQTSESYPDFDPLAIFSTDEADAEAAPA
KTGTIYGSDVESEVALKTVDFPLDGGGFKVGPSMSLDEVEENVRTNGSVLTEGSTQVASLFYVDPQRFASDADNLDLMQG
LAARVVEENMSVSSYENITKQSTEYADDIIPVRRALPIAKVMTNAGYAEAQAEDAAGYLGEALGAKNLGPGDVLRIGIIQ
KGEEAKIVRATIYSNSRHVLTMAVDDRGRFVPGAEPPKLEAVAAAFDDTGRPVISSSHDLPRVYDGIYRAALSYGMNADM
IALVVKLLASNVDFQAQLKPADSLEAFFSVTDESGRATEDSELLYVNAKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQ
FLLRNPVPNGRFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGGYGNQTLIRHANGYVSSYNHQ
SAIAKSVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVNGNKVDPLRIRLPGGKSLAGEALAQFEKERERIDELLGDDA
NEVASK
>Mature_645_residues
SSDKNMLRSLGDHPPILADGRRAPDRREISLRWLSGTFLTGITSSLLMGVALFAALDGRQQLAIPAEAFAALAPSAPAGA
AKRGDRVLSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQPFVHVKMALAANHQTSESYPDFDPLAIFSTDEADAEAAPAK
TGTIYGSDVESEVALKTVDFPLDGGGFKVGPSMSLDEVEENVRTNGSVLTEGSTQVASLFYVDPQRFASDADNLDLMQGL
AARVVEENMSVSSYENITKQSTEYADDIIPVRRALPIAKVMTNAGYAEAQAEDAAGYLGEALGAKNLGPGDVLRIGIIQK
GEEAKIVRATIYSNSRHVLTMAVDDRGRFVPGAEPPKLEAVAAAFDDTGRPVISSSHDLPRVYDGIYRAALSYGMNADMI
ALVVKLLASNVDFQAQLKPADSLEAFFSVTDESGRATEDSELLYVNAKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQF
LLRNPVPNGRFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGGYGNQTLIRHANGYVSSYNHQS
AIAKSVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVNGNKVDPLRIRLPGGKSLAGEALAQFEKERERIDELLGDDAN
EVASK

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=238, Percent_Identity=34.453781512605, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082174, Length=103, Percent_Identity=39.8058252427184, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 69575; Mature: 69444

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDKNMLRSLGDHPPILADGRRAPDRREISLRWLSGTFLTGITSSLLMGVALFAALDGR
CCCCHHHHHHCCCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
QQLAIPAEAFAALAPSAPAGAAKRGDRVLSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQ
CEEECCHHHHHHHCCCCCCCCHHCCCEECCCCEEECCCCHHHHHHHHHHHCCHHHHHHCC
PFVHVKMALAANHQTSESYPDFDPLAIFSTDEADAEAAPAKTGTIYGSDVESEVALKTVD
CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEC
FPLDGGGFKVGPSMSLDEVEENVRTNGSVLTEGSTQVASLFYVDPQRFASDADNLDLMQG
CCCCCCCEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEECHHHHHCCCCCHHHHHH
LAARVVEENMSVSSYENITKQSTEYADDIIPVRRALPIAKVMTNAGYAEAQAEDAAGYLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
EALGAKNLGPGDVLRIGIIQKGEEAKIVRATIYSNSRHVLTMAVDDRGRFVPGAEPPKLE
HHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHH
AVAAAFDDTGRPVISSSHDLPRVYDGIYRAALSYGMNADMIALVVKLLASNVDFQAQLKP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCC
ADSLEAFFSVTDESGRATEDSELLYVNAKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQ
HHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
FLLRNPVPNGRFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGG
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCC
YGNQTLIRHANGYVSSYNHQSAIAKSVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVN
CCCCCEEEECCCCCCCCCHHHHHHHHCCCCCHHHCCEEEEEEECCCCCCCCCEEEEEEEE
GNKVDPLRIRLPGGKSLAGEALAQFEKERERIDELLGDDANEVASK
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure 
SSDKNMLRSLGDHPPILADGRRAPDRREISLRWLSGTFLTGITSSLLMGVALFAALDGR
CCCHHHHHHCCCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
QQLAIPAEAFAALAPSAPAGAAKRGDRVLSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQ
CEEECCHHHHHHHCCCCCCCCHHCCCEECCCCEEECCCCHHHHHHHHHHHCCHHHHHHCC
PFVHVKMALAANHQTSESYPDFDPLAIFSTDEADAEAAPAKTGTIYGSDVESEVALKTVD
CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEC
FPLDGGGFKVGPSMSLDEVEENVRTNGSVLTEGSTQVASLFYVDPQRFASDADNLDLMQG
CCCCCCCEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEECHHHHHCCCCCHHHHHH
LAARVVEENMSVSSYENITKQSTEYADDIIPVRRALPIAKVMTNAGYAEAQAEDAAGYLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
EALGAKNLGPGDVLRIGIIQKGEEAKIVRATIYSNSRHVLTMAVDDRGRFVPGAEPPKLE
HHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHH
AVAAAFDDTGRPVISSSHDLPRVYDGIYRAALSYGMNADMIALVVKLLASNVDFQAQLKP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCC
ADSLEAFFSVTDESGRATEDSELLYVNAKFGDAETRFYRFQDPDDNSIDYFDKDGKSIRQ
HHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
FLLRNPVPNGRFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVQKAGWDSGG
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCC
YGNQTLIRHANGYVSSYNHQSAIAKSVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVN
CCCCCEEEECCCCCCCCCHHHHHHHHCCCCCHHHCCEEEEEEECCCCCCCCCEEEEEEEE
GNKVDPLRIRLPGGKSLAGEALAQFEKERERIDELLGDDANEVASK
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]