Click here to switch to the map view.

The map label for this gene is yiaM [C]

Identifier: 150397682

GI number: 150397682

Start: 2566239

End: 2566772

Strand: Reverse

Name: yiaM [C]

Synonym: Smed_2482

Alternate gene names: 150397682

Gene position: 2566772-2566239 (Counterclockwise)

Preceding gene: 150397683

Following gene: 150397681

Centisome position: 67.87

GC content: 58.24

Gene sequence:

>534_bases
ATGCAAAAAGCGATCGATATTTTCTACAGACTTCTCGGGCTGCTGCTGATCATGCTGCTCGCAGGCATGGCCTTGATGGT
GTTCCTGAACGTGGTGCTGCGCTACGGCTTCAACTCCGGGATCAACATCTCGGACGAGATGTCGCGGTACTTCTTCGTAT
GGCTGACCTTCATCGGTGCCGTCGTCACCTTCCGGGAAAACTCGCATGTCGGCGTCGAGACCCTGGTCACGCTGTTCGGC
CGCAAGGGCCGCATCATCTGCATGATCCTTTCCAACATCGTCGTCATCGCAGTGTCGGCGATCTTCTTCTGGGGCACCTG
GAAACAGTCGCCGATCAACGCCTCGATGGCTGCGCCCGTTACCGGCATCTCGATGCTGTGGGTCTACGGGATCGGGTTCT
TCACCGGTGCGGGCGTCGTCCTGATCGCGCTCGAACGCCTTTTCCGCTTGTTGACCGGGCGCGTAACGGAAGAAGAAATC
GCCGCCTTCGCCGGTGAAAACATGTCTCTCGAACACCTGGCGGAGCGCACATAA

Upstream 100 bases:

>100_bases
CGATCACAGCGACCGCTGCCCGAAATGGAGTTTCGGCATCGGCGCTCTGATGAAGAATCTTGCCGCGCGCGGGCTCTTGT
AGGCGGAACGGGAGGGGCAG

Downstream 100 bases:

>100_bases
TGACCCTTGTCGTCTTCATCGTTTCGCTACTCGGTGCCATGGCAATCGGCGTGCCGGTCGCCTTCTCCCTGATGTTCTGC
GGCGTCATACTCATGTGGTA

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MQKAIDIFYRLLGLLLIMLLAGMALMVFLNVVLRYGFNSGINISDEMSRYFFVWLTFIGAVVTFRENSHVGVETLVTLFG
RKGRIICMILSNIVVIAVSAIFFWGTWKQSPINASMAAPVTGISMLWVYGIGFFTGAGVVLIALERLFRLLTGRVTEEEI
AAFAGENMSLEHLAERT

Sequences:

>Translated_177_residues
MQKAIDIFYRLLGLLLIMLLAGMALMVFLNVVLRYGFNSGINISDEMSRYFFVWLTFIGAVVTFRENSHVGVETLVTLFG
RKGRIICMILSNIVVIAVSAIFFWGTWKQSPINASMAAPVTGISMLWVYGIGFFTGAGVVLIALERLFRLLTGRVTEEEI
AAFAGENMSLEHLAERT
>Mature_177_residues
MQKAIDIFYRLLGLLLIMLLAGMALMVFLNVVLRYGFNSGINISDEMSRYFFVWLTFIGAVVTFRENSHVGVETLVTLFG
RKGRIICMILSNIVVIAVSAIFFWGTWKQSPINASMAAPVTGISMLWVYGIGFFTGAGVVLIALERLFRLLTGRVTEEEI
AAFAGENMSLEHLAERT

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=143, Percent_Identity=32.1678321678322, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 19711; Mature: 19711

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKAIDIFYRLLGLLLIMLLAGMALMVFLNVVLRYGFNSGINISDEMSRYFFVWLTFIGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VVTFRENSHVGVETLVTLFGRKGRIICMILSNIVVIAVSAIFFWGTWKQSPINASMAAPV
HHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCH
TGISMLWVYGIGFFTGAGVVLIALERLFRLLTGRVTEEEIAAFAGENMSLEHLAERT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHCCC
>Mature Secondary Structure
MQKAIDIFYRLLGLLLIMLLAGMALMVFLNVVLRYGFNSGINISDEMSRYFFVWLTFIGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VVTFRENSHVGVETLVTLFGRKGRIICMILSNIVVIAVSAIFFWGTWKQSPINASMAAPV
HHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCH
TGISMLWVYGIGFFTGAGVVLIALERLFRLLTGRVTEEEIAAFAGENMSLEHLAERT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]