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The map label for this gene is yiaN [C]

Identifier: 150397681

GI number: 150397681

Start: 2564962

End: 2566239

Strand: Reverse

Name: yiaN [C]

Synonym: Smed_2481

Alternate gene names: 150397681

Gene position: 2566239-2564962 (Counterclockwise)

Preceding gene: 150397682

Following gene: 150397680

Centisome position: 67.86

GC content: 60.09

Gene sequence:

>1278_bases
ATGACCCTTGTCGTCTTCATCGTTTCGCTACTCGGTGCCATGGCAATCGGCGTGCCGGTCGCCTTCTCCCTGATGTTCTG
CGGCGTCATACTCATGTGGTACATGGGTATGTTCAACACCCAGATCATTGCTCAAAACATGATCGCGGGTGCCGATACCT
TCACGCTCCTCGCCATTCCGTTCTTCATTCTCGCCGGTGAATTGATGAACGCGGGCGGGCTTTCGCGCCGCATCATCGAC
TTCGCAATCGCCTGTGTCGGTCATATTCGCGGCGGCCTCGGCATCGTTGCCATCATGGCGGCTGTGATCATGGCGAGCAT
CTCCGGTTCGGCGGCAGCCGACACCGCGGCACTTGCCGCGATCCTCATACCGATGATGGCGAAGGCCGGCTACAACGTCC
CCCGATCTGCCGGCCTGATCGCCGCAGGTGGCGTTATCGCCCCCGTCATCCCGCCATCCATGGCCTTCATCGTGTTCGGG
GTGGCGGCGAACGTTTCCATTACCCAGCTCTTCATGGCAGGCATCGTGCCCGGCCTCCTCATGGGTCTTGCCCTTGTCGC
AACCTGGCTGCTGGTCGTGCGGAAGGATGATATCCAGCCACTTCCACGTACGCCTTTGAAAGAGCGTCTCCGCGTCACCG
GGCGGGCGCTTTGGGCCCTCGGTATGCCGGTCATCATCCTGGGCGGCATCAAGGCCGGCGTCGTGACGCCGACCGAGGCC
GCCGTGGTAGCCGCATTCTATGCCCTCTTCGTCGGCATGGTCATTTATCGCGAGCTCAAGCCACGTGACCTGCCAGGCGT
CATCCTGCAGGCCGCGAAGACCACCGCTGTCATCATGTTCCTCGTCTGCGCTGCGCTCGTTTCCTCGTGGCTGATAACCG
CGGCGAACATTCCAGCGGAAATCACCGGATTCATCTCTCCGCTGATCGACCGCCCGACGCTTCTGATGTTCGTCATCATG
CTGGTCGTATTGGTTGTTGGCACCGCATTGGACCTTACCCCCACGATCCTGATCCTGACACCGGTGCTCATGCCGATTAT
CAAGCAGGCTGGAATCGATCCTGTCTATTTCGGCGTTCTATTCATCATGAATACCTGCATAGGGCTGCTGACCCCGCCTG
TCGGCGTCGTTTTGAACGTCGTCAGCGGCGTCGGCCGGGTTCCGCTCGGAAAGGTCATTGTCGGCGTGACCCCATTCCTG
GTCGCCCAGATACTGGTGCTTTTCCTTCTGGTCCTTTTTCCGGACATCGTCATCGTGCCCGCACGCTGGCTCAACTGA

Upstream 100 bases:

>100_bases
AACGCCTTTTCCGCTTGTTGACCGGGCGCGTAACGGAAGAAGAAATCGCCGCCTTCGCCGGTGAAAACATGTCTCTCGAA
CACCTGGCGGAGCGCACATA

Downstream 100 bases:

>100_bases
TCCTCAACCCCTCATCAATAAGTCCAAGGGAGGACATCATGAGAAAACTGCTACTAGCCACGACTGCCATCGCTCTCGGT
CTTTCGTCCGCAGCGCCGGC

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MTLVVFIVSLLGAMAIGVPVAFSLMFCGVILMWYMGMFNTQIIAQNMIAGADTFTLLAIPFFILAGELMNAGGLSRRIID
FAIACVGHIRGGLGIVAIMAAVIMASISGSAAADTAALAAILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFG
VAANVSITQLFMAGIVPGLLMGLALVATWLLVVRKDDIQPLPRTPLKERLRVTGRALWALGMPVIILGGIKAGVVTPTEA
AVVAAFYALFVGMVIYRELKPRDLPGVILQAAKTTAVIMFLVCAALVSSWLITAANIPAEITGFISPLIDRPTLLMFVIM
LVVLVVGTALDLTPTILILTPVLMPIIKQAGIDPVYFGVLFIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKVIVGVTPFL
VAQILVLFLLVLFPDIVIVPARWLN

Sequences:

>Translated_425_residues
MTLVVFIVSLLGAMAIGVPVAFSLMFCGVILMWYMGMFNTQIIAQNMIAGADTFTLLAIPFFILAGELMNAGGLSRRIID
FAIACVGHIRGGLGIVAIMAAVIMASISGSAAADTAALAAILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFG
VAANVSITQLFMAGIVPGLLMGLALVATWLLVVRKDDIQPLPRTPLKERLRVTGRALWALGMPVIILGGIKAGVVTPTEA
AVVAAFYALFVGMVIYRELKPRDLPGVILQAAKTTAVIMFLVCAALVSSWLITAANIPAEITGFISPLIDRPTLLMFVIM
LVVLVVGTALDLTPTILILTPVLMPIIKQAGIDPVYFGVLFIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKVIVGVTPFL
VAQILVLFLLVLFPDIVIVPARWLN
>Mature_424_residues
TLVVFIVSLLGAMAIGVPVAFSLMFCGVILMWYMGMFNTQIIAQNMIAGADTFTLLAIPFFILAGELMNAGGLSRRIIDF
AIACVGHIRGGLGIVAIMAAVIMASISGSAAADTAALAAILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFGV
AANVSITQLFMAGIVPGLLMGLALVATWLLVVRKDDIQPLPRTPLKERLRVTGRALWALGMPVIILGGIKAGVVTPTEAA
VVAAFYALFVGMVIYRELKPRDLPGVILQAAKTTAVIMFLVCAALVSSWLITAANIPAEITGFISPLIDRPTLLMFVIML
VVLVVGTALDLTPTILILTPVLMPIIKQAGIDPVYFGVLFIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKVIVGVTPFLV
AQILVLFLLVLFPDIVIVPARWLN

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=425, Percent_Identity=53.6470588235294, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 44529; Mature: 44398

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVVFIVSLLGAMAIGVPVAFSLMFCGVILMWYMGMFNTQIIAQNMIAGADTFTLLAIP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FFILAGELMNAGGLSRRIIDFAIACVGHIRGGLGIVAIMAAVIMASISGSAAADTAALAA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFGVAANVSITQLFMAGIVPGLL
HHHHHHHHCCCCCCCCCCCEEECCEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGLALVATWLLVVRKDDIQPLPRTPLKERLRVTGRALWALGMPVIILGGIKAGVVTPTEA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHH
AVVAAFYALFVGMVIYRELKPRDLPGVILQAAKTTAVIMFLVCAALVSSWLITAANIPAE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ITGFISPLIDRPTLLMFVIMLVVLVVGTALDLTPTILILTPVLMPIIKQAGIDPVYFGVL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKVIVGVTPFLVAQILVLFLLVLFPDIVIVP
HHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEC
ARWLN
CHHCC
>Mature Secondary Structure 
TLVVFIVSLLGAMAIGVPVAFSLMFCGVILMWYMGMFNTQIIAQNMIAGADTFTLLAIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FFILAGELMNAGGLSRRIIDFAIACVGHIRGGLGIVAIMAAVIMASISGSAAADTAALAA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFGVAANVSITQLFMAGIVPGLL
HHHHHHHHCCCCCCCCCCCEEECCEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGLALVATWLLVVRKDDIQPLPRTPLKERLRVTGRALWALGMPVIILGGIKAGVVTPTEA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHH
AVVAAFYALFVGMVIYRELKPRDLPGVILQAAKTTAVIMFLVCAALVSSWLITAANIPAE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ITGFISPLIDRPTLLMFVIMLVVLVVGTALDLTPTILILTPVLMPIIKQAGIDPVYFGVL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKVIVGVTPFLVAQILVLFLLVLFPDIVIVP
HHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEC
ARWLN
CHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]