Click here to switch to the map view.

The map label for this gene is ybgA [H]

Identifier: 150397677

GI number: 150397677

Start: 2559416

End: 2560150

Strand: Direct

Name: ybgA [H]

Synonym: Smed_2477

Alternate gene names: 150397677

Gene position: 2559416-2560150 (Clockwise)

Preceding gene: 150397672

Following gene: 150397686

Centisome position: 67.68

GC content: 59.59

Gene sequence:

>735_bases
ATGGGCATCGAGCGCAATTCACCAATCCCCCTCTATTTCCAGCTCGGCGAGACGTTGCGGGCCGCGATCGAGTCCGGAGC
GTACCCTCCCGGCAGCAAGCTGCCGACCGAAAGCGAGCTATGTCACCAGTACGACGTCTCGCGAAGCGTCGTCCGGCAGG
CTCTCCAGTCGCTTGCTCATGACAACCTCATCGGGACGGAGCGCGGAAGGGGCGCTTTCGTGCTCGACCGCAAGGTGCCT
ATCGCGCTCGTCCAGCAGCTCGATCCACTGCTTGAAAGCATGGCCAAGGCCGGCTTCAAACTGACGACCCGGGTGTTGAA
ACAGGAACGGATAAAGCCGCCCGCCCATGTCGCGGAACAGATCGGCGAAAATGATGCGGTGTTTCTGGAACGCCTGCGCT
ATGCGGACGGCGTGGTGTTCCTCGTCGTGCGCAACTACCTGCCCTATTCACGCTTTCCCGACCTGCTCCAGTCGAAAGAG
CTCGAGGAAGTCTCGCTGTACCAGTATCTTGCCAAACGCTATGACGCGGTGGCGACGACCGGCAAACGGCAGGTCGAGCT
CGCGCGCATAAACGAAGAGGCTATCGCCGCGCAGCTGCATGTGGAAATGAACAGCTACGTTCTGTTCAACCGCGAAGTCA
CCTACGACCAGAATAAACAGGTGCTCGAATATTACGAGTCCTGGCACCATCCTGATCGCACACGGCTGACCATCGACCTG
CACCGGACCTATTGA

Upstream 100 bases:

>100_bases
TCTCGTGAACGAGTTCTGGCGCATTTTGCGATGTCGGCTTGTCAGGTGACGGGAACAACGGGCAGAGTCACGCCGCGGGT
AACGGAAGGCAGAGATTCGC

Downstream 100 bases:

>100_bases
GCGCCAGATCACGATGTTTTCAGGTCGGCCTGACCTGAAAACATCGTGATCTACTCCAAGGAGCCGAGGCGTGGGATGCG
GGCGGAGAACCGCCCGCACT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGIERNSPIPLYFQLGETLRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAHDNLIGTERGRGAFVLDRKVP
IALVQQLDPLLESMAKAGFKLTTRVLKQERIKPPAHVAEQIGENDAVFLERLRYADGVVFLVVRNYLPYSRFPDLLQSKE
LEEVSLYQYLAKRYDAVATTGKRQVELARINEEAIAAQLHVEMNSYVLFNREVTYDQNKQVLEYYESWHHPDRTRLTIDL
HRTY

Sequences:

>Translated_244_residues
MGIERNSPIPLYFQLGETLRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAHDNLIGTERGRGAFVLDRKVP
IALVQQLDPLLESMAKAGFKLTTRVLKQERIKPPAHVAEQIGENDAVFLERLRYADGVVFLVVRNYLPYSRFPDLLQSKE
LEEVSLYQYLAKRYDAVATTGKRQVELARINEEAIAAQLHVEMNSYVLFNREVTYDQNKQVLEYYESWHHPDRTRLTIDL
HRTY
>Mature_243_residues
GIERNSPIPLYFQLGETLRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAHDNLIGTERGRGAFVLDRKVPI
ALVQQLDPLLESMAKAGFKLTTRVLKQERIKPPAHVAEQIGENDAVFLERLRYADGVVFLVVRNYLPYSRFPDLLQSKEL
EEVSLYQYLAKRYDAVATTGKRQVELARINEEAIAAQLHVEMNSYVLFNREVTYDQNKQVLEYYESWHHPDRTRLTIDLH
RTY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=28.5106382978723, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786950, Length=236, Percent_Identity=25.8474576271186, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788418, Length=218, Percent_Identity=25.2293577981651, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790118, Length=217, Percent_Identity=24.8847926267281, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28033; Mature: 27902

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIERNSPIPLYFQLGETLRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAH
CCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DNLIGTERGRGAFVLDRKVPIALVQQLDPLLESMAKAGFKLTTRVLKQERIKPPAHVAEQ
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
IGENDAVFLERLRYADGVVFLVVRNYLPYSRFPDLLQSKELEEVSLYQYLAKRYDAVATT
HCCCHHHHHHHHHHHCCHHEEEHHHCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GKRQVELARINEEAIAAQLHVEMNSYVLFNREVTYDQNKQVLEYYESWHHPDRTRLTIDL
CCCEEHHHHHCHHHHHHHHEEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
HRTY
ECCC
>Mature Secondary Structure 
GIERNSPIPLYFQLGETLRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAH
CCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DNLIGTERGRGAFVLDRKVPIALVQQLDPLLESMAKAGFKLTTRVLKQERIKPPAHVAEQ
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
IGENDAVFLERLRYADGVVFLVVRNYLPYSRFPDLLQSKELEEVSLYQYLAKRYDAVATT
HCCCHHHHHHHHHHHCCHHEEEHHHCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GKRQVELARINEEAIAAQLHVEMNSYVLFNREVTYDQNKQVLEYYESWHHPDRTRLTIDL
CCCEEHHHHHCHHHHHHHHEEEECCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
HRTY
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]