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The map label for this gene is rbsC [H]

Identifier: 150397673

GI number: 150397673

Start: 2554811

End: 2555803

Strand: Reverse

Name: rbsC [H]

Synonym: Smed_2473

Alternate gene names: 150397673

Gene position: 2555803-2554811 (Counterclockwise)

Preceding gene: 150397674

Following gene: 150397657

Centisome position: 67.58

GC content: 64.75

Gene sequence:

>993_bases
ATGAGCACTACGTCCGAAAGCGCAGCCGCGCCGTCACCGTTCACGCCCCGTATTCTGGAGGCGGTCCGCCACTACGGTAC
GCTCGGCATCTTCCTGGTCTTGGTACTGGTCGCCTCGCTCTGGTCTGATGCATTCCTGACGGAGCGCAACCTGATGAACG
TGGTGCGCCAGGTCGCCTCCGGTGCCGGCATCATGGCCATCGGAATGCTCTTCGTCGTGCTTACCCGCGGCATAGACCTC
TCGGTGGGTTCCATCGCCGCCGTTGGATCGGTGCTCTGCGCCCATCTCGTGGCAGTACAGGGCTACGGCGTTCCGATGGC
GATCCTGCTCGTGATCGTGAGCGGGGCAGCCTGCGGCGTGGTCACCGGCTTCTTCGTCGCCTATATGCGGCTGCCGTCTT
TTGTCATCTCGCTGGCGATGATGGCGATCGCCCGCGGCATCTCGCTGATCATCAGTGCGGGTCGCCCCATCACCATGGGT
TCGCCCGGCGCGCCGCTCGTCGATTTCGGCAGCGGCTTCCTTTTCGGCATTCCGCAGCCGGCGATCCTGATGCTGGCCAT
CTATGCCGTGGGGGGCGTGGTGCTGGCCTATACGAGCTTCGGCCGCATCGTCACCGCCATCGGCTCCAACGAGGAGGCGG
TTCGGCTCTCCGGCGTGCCGGTCGAGCGTTATGTGTTGTCCGTCTACGTCATCAGCGGCGCGCTCGCGGCGGTCGCCGGC
ATAGTCGCCGCGGGACGCACGGGCATAGGCACGCCGCAGGTCGGTGTCGGCGCGGAACTTGACGTCATCGCGGCCGTGGT
CATCGGCGGGGCCAGCCTCATGGGCGGGCGCGGCGGCATGTTCAACACGCTGCTCGGCGCGCTGATCCTCGGCATCATTA
CCAACATCATGAATCTTGCCGGCGTACCGGGATATCACCAGAACGTCTATCTCGGCCTGATCATCATCCTGGCGATGCTC
ATACAGTTCGTCACCGCTCGGTCACGACGTTAG

Upstream 100 bases:

>100_bases
GGGCGGTTGCTGGCGAACTCACCGAAAGCGAGTTCACGGAGCAGCACTTGCTGACGCTGGCGATGACCGGGTCGACCAGG
GAAAGGGATAACGCAAGCCA

Downstream 100 bases:

>100_bases
ATCACAATGCGTTAGTTCGGATCGACCTAACAATCTAAGTCAAAGCGGAATGCGGGCAGAAAGCCGTGTAGGGTTTCCGC
CCGCATTCCGCGAAAGCCGA

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSTTSESAAAPSPFTPRILEAVRHYGTLGIFLVLVLVASLWSDAFLTERNLMNVVRQVASGAGIMAIGMLFVVLTRGIDL
SVGSIAAVGSVLCAHLVAVQGYGVPMAILLVIVSGAACGVVTGFFVAYMRLPSFVISLAMMAIARGISLIISAGRPITMG
SPGAPLVDFGSGFLFGIPQPAILMLAIYAVGGVVLAYTSFGRIVTAIGSNEEAVRLSGVPVERYVLSVYVISGALAAVAG
IVAAGRTGIGTPQVGVGAELDVIAAVVIGGASLMGGRGGMFNTLLGALILGIITNIMNLAGVPGYHQNVYLGLIIILAML
IQFVTARSRR

Sequences:

>Translated_330_residues
MSTTSESAAAPSPFTPRILEAVRHYGTLGIFLVLVLVASLWSDAFLTERNLMNVVRQVASGAGIMAIGMLFVVLTRGIDL
SVGSIAAVGSVLCAHLVAVQGYGVPMAILLVIVSGAACGVVTGFFVAYMRLPSFVISLAMMAIARGISLIISAGRPITMG
SPGAPLVDFGSGFLFGIPQPAILMLAIYAVGGVVLAYTSFGRIVTAIGSNEEAVRLSGVPVERYVLSVYVISGALAAVAG
IVAAGRTGIGTPQVGVGAELDVIAAVVIGGASLMGGRGGMFNTLLGALILGIITNIMNLAGVPGYHQNVYLGLIIILAML
IQFVTARSRR
>Mature_329_residues
STTSESAAAPSPFTPRILEAVRHYGTLGIFLVLVLVASLWSDAFLTERNLMNVVRQVASGAGIMAIGMLFVVLTRGIDLS
VGSIAAVGSVLCAHLVAVQGYGVPMAILLVIVSGAACGVVTGFFVAYMRLPSFVISLAMMAIARGISLIISAGRPITMGS
PGAPLVDFGSGFLFGIPQPAILMLAIYAVGGVVLAYTSFGRIVTAIGSNEEAVRLSGVPVERYVLSVYVISGALAAVAGI
VAAGRTGIGTPQVGVGAELDVIAAVVIGGASLMGGRGGMFNTLLGALILGIITNIMNLAGVPGYHQNVYLGLIIILAMLI
QFVTARSRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=38.9408099688474, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI145693152, Length=329, Percent_Identity=35.8662613981763, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=36.4779874213836, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=33.8192419825073, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=33.2278481012658, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=34.5394736842105, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI145693214, Length=247, Percent_Identity=37.246963562753, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787793, Length=253, Percent_Identity=34.7826086956522, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788471, Length=285, Percent_Identity=30.8771929824561, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787794, Length=273, Percent_Identity=31.8681318681319, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33751; Mature: 33620

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTSESAAAPSPFTPRILEAVRHYGTLGIFLVLVLVASLWSDAFLTERNLMNVVRQVAS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGIMAIGMLFVVLTRGIDLSVGSIAAVGSVLCAHLVAVQGYGVPMAILLVIVSGAACGV
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
VTGFFVAYMRLPSFVISLAMMAIARGISLIISAGRPITMGSPGAPLVDFGSGFLFGIPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCEECCCHH
AILMLAIYAVGGVVLAYTSFGRIVTAIGSNEEAVRLSGVPVERYVLSVYVISGALAAVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
IVAAGRTGIGTPQVGVGAELDVIAAVVIGGASLMGGRGGMFNTLLGALILGIITNIMNLA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
GVPGYHQNVYLGLIIILAMLIQFVTARSRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STTSESAAAPSPFTPRILEAVRHYGTLGIFLVLVLVASLWSDAFLTERNLMNVVRQVAS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGIMAIGMLFVVLTRGIDLSVGSIAAVGSVLCAHLVAVQGYGVPMAILLVIVSGAACGV
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
VTGFFVAYMRLPSFVISLAMMAIARGISLIISAGRPITMGSPGAPLVDFGSGFLFGIPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCEECCCHH
AILMLAIYAVGGVVLAYTSFGRIVTAIGSNEEAVRLSGVPVERYVLSVYVISGALAAVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
IVAAGRTGIGTPQVGVGAELDVIAAVVIGGASLMGGRGGMFNTLLGALILGIITNIMNLA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
GVPGYHQNVYLGLIIILAMLIQFVTARSRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]