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The map label for this gene is deoC

Identifier: 150397669

GI number: 150397669

Start: 2550093

End: 2550839

Strand: Direct

Name: deoC

Synonym: Smed_2469

Alternate gene names: 150397669

Gene position: 2550093-2550839 (Clockwise)

Preceding gene: 150397668

Following gene: 150397670

Centisome position: 67.43

GC content: 66.53

Gene sequence:

>747_bases
ATGAACGACAATCGCCACCGCTCCAAACCGCCGGCATCGCTCGCTCCCCGCGACCTCGCCGCCCTGATCGATATCAGCGC
CGTCCAGGCCTTCCACACGGAAGCGGACGTTCGGGAGCTGGCGGAAATCGCGGTTGCAGAGGGGTTCATCGCCGCGCATG
CGTTGCCGAATTTCGTGCCGCTGCTGCGAAGCCTCGTACCCCCGGGCGGCCCGACGCTCGTCGGCGGACCGGTGGGCTTC
CCCTCGGGCGGGCACACAACCCGCATGAAGATCGCAGAGGCCTCGGAGCTTGCCGAAGGCGGAGCCCAGGAACTCGACAT
GATGATCAATGTCGGCCGCCTCAAATCCGGCGACATCGGCTATGTCCGGAGCGAGATCCGCGCCGTCGTGGAGGCGATCG
CCCCGGTGCCGCTCAAGGTCATTTTGGAGCTCGCCCATCTCACGGACGAGGAGATCCGCACGGCTTCTGCCATCGTTGCC
GAAAGCGGAGCTGCCTTCGTGAAGACCGGCACCGGCTGGACGCCGAGCGCCACGACGTTGGAGAGGCTGAAGCTCATCGC
CGTCACTGTCGAGGGCGCGGTGGAGATCAAGGCCGCCGGCGGCATCCGTTCACTAGACGCCATCGCCGAAATGTTGCGGC
TGGGGGTAACCCGCTTCGGCATCAATACGCAGGTCGCCGTCGACCTCGTGCGCCAATGCGCCGCCCTGCCCGGCAGCCGC
CTCGATATAGCCGGCAAGGCGGATTGA

Upstream 100 bases:

>100_bases
CCACCAGCGTCGCACTGCGACGCGGCGCCGAACATGTCGACCTTTTCACGGGCATGAAGCGCAACCTTCGTTATCTGCGC
ATGAGCAACGAGACATAGAG

Downstream 100 bases:

>100_bases
CGCCATGGGCGACACTGTTGCAGCATTCGACCTCGGAACCGGAGGCGTCAAGGCGGCGATCTTCCGTCCGGACGGGGTCT
GCCTTGCGGAAGAGGTCGTC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNDNRHRSKPPASLAPRDLAALIDISAVQAFHTEADVRELAEIAVAEGFIAAHALPNFVPLLRSLVPPGGPTLVGGPVGF
PSGGHTTRMKIAEASELAEGGAQELDMMINVGRLKSGDIGYVRSEIRAVVEAIAPVPLKVILELAHLTDEEIRTASAIVA
ESGAAFVKTGTGWTPSATTLERLKLIAVTVEGAVEIKAAGGIRSLDAIAEMLRLGVTRFGINTQVAVDLVRQCAALPGSR
LDIAGKAD

Sequences:

>Translated_248_residues
MNDNRHRSKPPASLAPRDLAALIDISAVQAFHTEADVRELAEIAVAEGFIAAHALPNFVPLLRSLVPPGGPTLVGGPVGF
PSGGHTTRMKIAEASELAEGGAQELDMMINVGRLKSGDIGYVRSEIRAVVEAIAPVPLKVILELAHLTDEEIRTASAIVA
ESGAAFVKTGTGWTPSATTLERLKLIAVTVEGAVEIKAAGGIRSLDAIAEMLRLGVTRFGINTQVAVDLVRQCAALPGSR
LDIAGKAD
>Mature_248_residues
MNDNRHRSKPPASLAPRDLAALIDISAVQAFHTEADVRELAEIAVAEGFIAAHALPNFVPLLRSLVPPGGPTLVGGPVGF
PSGGHTTRMKIAEASELAEGGAQELDMMINVGRLKSGDIGYVRSEIRAVVEAIAPVPLKVILELAHLTDEEIRTASAIVA
ESGAAFVKTGTGWTPSATTLERLKLIAVTVEGAVEIKAAGGIRSLDAIAEMLRLGVTRFGINTQVAVDLVRQCAALPGSR
LDIAGKAD

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790841, Length=176, Percent_Identity=31.25, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_SINMW (A6UCC1)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001328136.1
- ProteinModelPortal:   A6UCC1
- SMR:   A6UCC1
- STRING:   A6UCC1
- GeneID:   5323330
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_2469
- eggNOG:   COG0274
- HOGENOM:   HBG636421
- OMA:   GIRNSDD
- ProtClustDB:   CLSK886450
- BioCyc:   SMED366394:SMED_2469-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 25860; Mature: 25860

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: ACT_SITE 168-168 ACT_SITE 197-197

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNRHRSKPPASLAPRDLAALIDISAVQAFHTEADVRELAEIAVAEGFIAAHALPNFVP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSLVPPGGPTLVGGPVGFPSGGHTTRMKIAEASELAEGGAQELDMMINVGRLKSGDIG
HHHHHCCCCCCEEECCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCHH
YVRSEIRAVVEAIAPVPLKVILELAHLTDEEIRTASAIVAESGAAFVKTGTGWTPSATTL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
ERLKLIAVTVEGAVEIKAAGGIRSLDAIAEMLRLGVTRFGINTQVAVDLVRQCAALPGSR
HHHEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
LDIAGKAD
CCCCCCCC
>Mature Secondary Structure
MNDNRHRSKPPASLAPRDLAALIDISAVQAFHTEADVRELAEIAVAEGFIAAHALPNFVP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSLVPPGGPTLVGGPVGFPSGGHTTRMKIAEASELAEGGAQELDMMINVGRLKSGDIG
HHHHHCCCCCCEEECCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCHH
YVRSEIRAVVEAIAPVPLKVILELAHLTDEEIRTASAIVAESGAAFVKTGTGWTPSATTL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
ERLKLIAVTVEGAVEIKAAGGIRSLDAIAEMLRLGVTRFGINTQVAVDLVRQCAALPGSR
HHHEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
LDIAGKAD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA