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The map label for this gene is ydfG [C]

Identifier: 150397661

GI number: 150397661

Start: 2543501

End: 2544229

Strand: Direct

Name: ydfG [C]

Synonym: Smed_2461

Alternate gene names: 150397661

Gene position: 2543501-2544229 (Clockwise)

Preceding gene: 150397660

Following gene: 150397662

Centisome position: 67.25

GC content: 62.28

Gene sequence:

>729_bases
ATGGCCGATAGAAAGCCGCTCGTCATGATCACCGGCGCAAGCGCCGGTATCGGGCAGGAGACTGCGCGCGTCTTTTCGGC
CGCGGGCTATCCCCTGCTCCTGATTGCCCGGCGGCCCGAACTGATCGAGGCGATGGGACTCCAGAACGCGCTGGCGGTCG
CAGCCGACGTCCGTGACTATGATGCGCTCGCGGGGGCGATCAGGCAGGGTGAGGCACGGTTCGGCCCCGTCGACTGCCTC
ATCAACAATGCCGGCATTTCCCGTCTCGCGCGGCTCGACGAACAGGATCCCGCGCAATGGCGCGATCTCGTGGACATCAA
CTGCCTCGGCGTTCTCAACGGCATGCATGCGGTCGCTCCAGGCATGAAGGAGCGCCGCCACGGCACTATCATCAACGTTT
CCTCGATCGCCGGCCGCAAGGTCTATCCGCACCATGACGTCTATGGCGGCACGAAGCATTTCGTTCATGCCGTCAGCGAA
GGCATGCGCCAGACCATGTCGGCCTATCGAGTTCGCGTCATGGTTATCTCGCCCGGGGTTGCGAAGTCTGAAATCGACAA
GACCATCACCCACCAGAACGCTTACGACTTCTGGGACGGCGGCCGCAAGCTGCTGGATGGAGGGCTCGACGCCAACGACA
TCGCGCGGACCATGCTCTTCGCCTATCAGCTGCCGCAGAACGTCAATCTCCAGGAAATGACGATCACCCATACAGGCCAG
GAATTCTGA

Upstream 100 bases:

>100_bases
ATGCCACGCCGGTTGCCGTCACCGCTCCCGCGGTGCGCGACGCGATCCTGGCGCTCGATGCGCTGTCGCGCAGCATCGAT
TGAGCAGCGGGAGGAAAAGC

Downstream 100 bases:

>100_bases
CATGACGGAAACCCCTTCCTACGACGACCTGCTCGATTTCGCCGGGAAGACGGTCGTCATCACGGGCGCCGCCACCGGCA
TCGGCCGGGCGGTTGCGGAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MADRKPLVMITGASAGIGQETARVFSAAGYPLLLIARRPELIEAMGLQNALAVAADVRDYDALAGAIRQGEARFGPVDCL
INNAGISRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAPGMKERRHGTIINVSSIAGRKVYPHHDVYGGTKHFVHAVSE
GMRQTMSAYRVRVMVISPGVAKSEIDKTITHQNAYDFWDGGRKLLDGGLDANDIARTMLFAYQLPQNVNLQEMTITHTGQ
EF

Sequences:

>Translated_242_residues
MADRKPLVMITGASAGIGQETARVFSAAGYPLLLIARRPELIEAMGLQNALAVAADVRDYDALAGAIRQGEARFGPVDCL
INNAGISRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAPGMKERRHGTIINVSSIAGRKVYPHHDVYGGTKHFVHAVSE
GMRQTMSAYRVRVMVISPGVAKSEIDKTITHQNAYDFWDGGRKLLDGGLDANDIARTMLFAYQLPQNVNLQEMTITHTGQ
EF
>Mature_241_residues
ADRKPLVMITGASAGIGQETARVFSAAGYPLLLIARRPELIEAMGLQNALAVAADVRDYDALAGAIRQGEARFGPVDCLI
NNAGISRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAPGMKERRHGTIINVSSIAGRKVYPHHDVYGGTKHFVHAVSEG
MRQTMSAYRVRVMVISPGVAKSEIDKTITHQNAYDFWDGGRKLLDGGLDANDIARTMLFAYQLPQNVNLQEMTITHTGQE
F

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=188, Percent_Identity=34.5744680851064, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=32.1052631578947, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=30.8900523560209, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=25.0996015936255, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7657478, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI157739938, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI40254992, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7705925, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI150247226, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=134, Percent_Identity=32.089552238806, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787820, Length=251, Percent_Identity=29.4820717131474, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=35.5670103092784, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=29.4416243654822, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=26.063829787234, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=186, Percent_Identity=25.2688172043011, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=25.6544502617801, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786812, Length=243, Percent_Identity=25.1028806584362, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789208, Length=179, Percent_Identity=26.8156424581006, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=228, Percent_Identity=25.8771929824561, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=27.6041666666667, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=29.9539170506912, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=29.1338582677165, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641232, Length=250, Percent_Identity=28, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=28.4584980237154, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=30.7086614173228, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24648944, Length=244, Percent_Identity=26.6393442622951, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=29.8804780876494, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=31.4432989690722, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=26.2569832402235, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=28.7958115183246, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=26.4822134387352, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648693, Length=254, Percent_Identity=26.7716535433071, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=254, Percent_Identity=26.7716535433071, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=28.7958115183246, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161076933, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584748, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007232, Length=182, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=183, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26425; Mature: 26293

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRKPLVMITGASAGIGQETARVFSAAGYPLLLIARRPELIEAMGLQNALAVAADVRDY
CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHH
DALAGAIRQGEARFGPVDCLINNAGISRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAP
HHHHHHHHCCCCCCCCHHEEECCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCHHHHCC
GMKERRHGTIINVSSIAGRKVYPHHDVYGGTKHFVHAVSEGMRQTMSAYRVRVMVISPGV
CHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCC
AKSEIDKTITHQNAYDFWDGGRKLLDGGLDANDIARTMLFAYQLPQNVNLQEMTITHTGQ
CHHHHHHHHHCCCCCCHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
EF
CC
>Mature Secondary Structure 
ADRKPLVMITGASAGIGQETARVFSAAGYPLLLIARRPELIEAMGLQNALAVAADVRDY
CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHH
DALAGAIRQGEARFGPVDCLINNAGISRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAP
HHHHHHHHCCCCCCCCHHEEECCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCHHHHCC
GMKERRHGTIINVSSIAGRKVYPHHDVYGGTKHFVHAVSEGMRQTMSAYRVRVMVISPGV
CHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCC
AKSEIDKTITHQNAYDFWDGGRKLLDGGLDANDIARTMLFAYQLPQNVNLQEMTITHTGQ
CHHHHHHHHHCCCCCCHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA