| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397656
Identifier: 150397656
GI number: 150397656
Start: 2538036
End: 2539391
Strand: Reverse
Name: 150397656
Synonym: Smed_2456
Alternate gene names: NA
Gene position: 2539391-2538036 (Counterclockwise)
Preceding gene: 150397657
Following gene: 150397655
Centisome position: 67.15
GC content: 61.06
Gene sequence:
>1356_bases ATGAAATCAATGCTGAAAAAGGGCTTGCTCGCCGCGGCGCTGATGGCCTCGACCGCGCCTGCGGCCATGGCGCAGGAATG CGCGGATGCGGATCGCGTGCCGATCACCTGGTCGACGATTGCCGGCTTCTACACCGATGCGATGGCAGAGCTGGTATCGG GCTTCGAGGCAGGCCATTGCGTGAAGGTCAATGTCGTCAACATAGACAACTCACAGCTCTACAACAAGCAGGTCATCGAG ATGGTCGGCCAGACCGGTGCCTATGATGTCGTGACCCTCGAAACCTCGGAGAAGGCGGAATTCGCAGAGAACGGTTTCAT CCTGCCGATGACCGAATATTTCGCGGACAAGAAGGCGCAGCTCGACGACGTCGCGCCGACGCTCGCTGCTCTGACGACGC AGTACAAGGATGATGTCTGGGGTCTGCCTTATTACACCTATACGGCCGGATATATCTATCGTGCCGACCTGTTCGACGAT CCCACGGAAAAGGAGGCCTTCAAGAAGCGCTTCAACTACGACCTGGCCGTGCCGACCACCTGGGCGCAGCACCGCGATAT CGCCGAGTTCTTCACGCGTAAGGCCGGTGAGACGCTGAAGGGCGAAAAGCTCACCAAGGACTTTTACGGCGTCGGCCTGA TGGCCGGTCCTTTCCCGGAAATCCAGGACGAGATGTCCGGCGTGCTCTGGTCGCAAGGCGCGGACTGGCTCACCGACGAG GGCAAGGTGCCGGTCGATGCCGTCGAAAAGGCGATGAACGACTATCTGGAACTGGTCAAGTATGCGCCGCCCGCCGCGCT CACCGTTACCTATGACGGCGTCATGAACCAGATGAAGGACGGGCAGATCGCCCAGACCTATTCCTTCTTCCTCGACCAAT GGCCGAATGCAGTGCAGACCGAAACCAGCGTGGCCGGCGCCAAGATGGGCGTCGCCGAGGCGCCGGAGAAGAAGGCCTAT ATCGGCGGCTTCCTGCTGGCGGTTTCCGCATCCTCCGCCCACCCGAAGGAGGCGATGGACTTCGTCGCCCACATCGGCGG ACATGATGCGCAGATGGAGTTCGCCAAGGCCGGCGGTACCTCGACGCTGATGAGCGTTCTTTCCGATCCGGCCTTTGCCG CGCCGGAAAGCCGCGGGAAGACCGGCCACTTTTCAACGCTCCTGGAGATCTTCGACTCGATGAAGGGTTTCCGCTCGAAC CTGTTCGATACGCCGTTCGGCGCGAAGATCTACAACACGATGCAGATCCCGCTGCAATCGGCCGCTGCCGGTCAGATTTC GGCGCGCCAGGCCGCCGAACGGCTTGCCGTCGAAGTCGAGAAGATTTGCGGCGGCCCGTGCCCGATCGGCAAGTGA
Upstream 100 bases:
>100_bases TCGCGGAGCCCGGCCGCACCGGCCGGAAATGCCGGGGAGAACTAGTCTCATAGCCGTGCCGGGGCAGGGAGTCTCCGGCC AACAACAGGGAGGGAACAAT
Downstream 100 bases:
>100_bases TCGGACACGTCGCTCAAAGCCTTGCATGGCGGGCGCTCTGCCCGCCATGCGCTTGACCGAAAGGCGCGGGCGGTCCCGCG CAATCTTCTGGAGGAGTTTG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC Transporter; Sugar ABC Transporter
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MKSMLKKGLLAAALMASTAPAAMAQECADADRVPITWSTIAGFYTDAMAELVSGFEAGHCVKVNVVNIDNSQLYNKQVIE MVGQTGAYDVVTLETSEKAEFAENGFILPMTEYFADKKAQLDDVAPTLAALTTQYKDDVWGLPYYTYTAGYIYRADLFDD PTEKEAFKKRFNYDLAVPTTWAQHRDIAEFFTRKAGETLKGEKLTKDFYGVGLMAGPFPEIQDEMSGVLWSQGADWLTDE GKVPVDAVEKAMNDYLELVKYAPPAALTVTYDGVMNQMKDGQIAQTYSFFLDQWPNAVQTETSVAGAKMGVAEAPEKKAY IGGFLLAVSASSAHPKEAMDFVAHIGGHDAQMEFAKAGGTSTLMSVLSDPAFAAPESRGKTGHFSTLLEIFDSMKGFRSN LFDTPFGAKIYNTMQIPLQSAAAGQISARQAAERLAVEVEKICGGPCPIGK
Sequences:
>Translated_451_residues MKSMLKKGLLAAALMASTAPAAMAQECADADRVPITWSTIAGFYTDAMAELVSGFEAGHCVKVNVVNIDNSQLYNKQVIE MVGQTGAYDVVTLETSEKAEFAENGFILPMTEYFADKKAQLDDVAPTLAALTTQYKDDVWGLPYYTYTAGYIYRADLFDD PTEKEAFKKRFNYDLAVPTTWAQHRDIAEFFTRKAGETLKGEKLTKDFYGVGLMAGPFPEIQDEMSGVLWSQGADWLTDE GKVPVDAVEKAMNDYLELVKYAPPAALTVTYDGVMNQMKDGQIAQTYSFFLDQWPNAVQTETSVAGAKMGVAEAPEKKAY IGGFLLAVSASSAHPKEAMDFVAHIGGHDAQMEFAKAGGTSTLMSVLSDPAFAAPESRGKTGHFSTLLEIFDSMKGFRSN LFDTPFGAKIYNTMQIPLQSAAAGQISARQAAERLAVEVEKICGGPCPIGK >Mature_451_residues MKSMLKKGLLAAALMASTAPAAMAQECADADRVPITWSTIAGFYTDAMAELVSGFEAGHCVKVNVVNIDNSQLYNKQVIE MVGQTGAYDVVTLETSEKAEFAENGFILPMTEYFADKKAQLDDVAPTLAALTTQYKDDVWGLPYYTYTAGYIYRADLFDD PTEKEAFKKRFNYDLAVPTTWAQHRDIAEFFTRKAGETLKGEKLTKDFYGVGLMAGPFPEIQDEMSGVLWSQGADWLTDE GKVPVDAVEKAMNDYLELVKYAPPAALTVTYDGVMNQMKDGQIAQTYSFFLDQWPNAVQTETSVAGAKMGVAEAPEKKAY IGGFLLAVSASSAHPKEAMDFVAHIGGHDAQMEFAKAGGTSTLMSVLSDPAFAAPESRGKTGHFSTLLEIFDSMKGFRSN LFDTPFGAKIYNTMQIPLQSAAAGQISARQAAERLAVEVEKICGGPCPIGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48990; Mature: 48990
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSMLKKGLLAAALMASTAPAAMAQECADADRVPITWSTIAGFYTDAMAELVSGFEAGHC CHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCE VKVNVVNIDNSQLYNKQVIEMVGQTGAYDVVTLETSEKAEFAENGFILPMTEYFADKKAQ EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCEEEEEHHHHCCCCCH LDDVAPTLAALTTQYKDDVWGLPYYTYTAGYIYRADLFDDPTEKEAFKKRFNYDLAVPTT HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC WAQHRDIAEFFTRKAGETLKGEKLTKDFYGVGLMAGPFPEIQDEMSGVLWSQGADWLTDE HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC GKVPVDAVEKAMNDYLELVKYAPPAALTVTYDGVMNQMKDGQIAQTYSFFLDQWPNAVQT CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHCCCHHHH ETSVAGAKMGVAEAPEKKAYIGGFLLAVSASSAHPKEAMDFVAHIGGHDAQMEFAKAGGT HHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCH STLMSVLSDPAFAAPESRGKTGHFSTLLEIFDSMKGFRSNLFDTPFGAKIYNTMQIPLQS HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCHHH AAAGQISARQAAERLAVEVEKICGGPCPIGK CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKSMLKKGLLAAALMASTAPAAMAQECADADRVPITWSTIAGFYTDAMAELVSGFEAGHC CHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCE VKVNVVNIDNSQLYNKQVIEMVGQTGAYDVVTLETSEKAEFAENGFILPMTEYFADKKAQ EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCEEEEEHHHHCCCCCH LDDVAPTLAALTTQYKDDVWGLPYYTYTAGYIYRADLFDDPTEKEAFKKRFNYDLAVPTT HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC WAQHRDIAEFFTRKAGETLKGEKLTKDFYGVGLMAGPFPEIQDEMSGVLWSQGADWLTDE HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC GKVPVDAVEKAMNDYLELVKYAPPAALTVTYDGVMNQMKDGQIAQTYSFFLDQWPNAVQT CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHCCCHHHH ETSVAGAKMGVAEAPEKKAYIGGFLLAVSASSAHPKEAMDFVAHIGGHDAQMEFAKAGGT HHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCH STLMSVLSDPAFAAPESRGKTGHFSTLLEIFDSMKGFRSNLFDTPFGAKIYNTMQIPLQS HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCHHH AAAGQISARQAAERLAVEVEKICGGPCPIGK CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA