| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yxbG [H]
Identifier: 150397645
GI number: 150397645
Start: 2527415
End: 2528188
Strand: Reverse
Name: yxbG [H]
Synonym: Smed_2445
Alternate gene names: 150397645
Gene position: 2528188-2527415 (Counterclockwise)
Preceding gene: 150397646
Following gene: 150397644
Centisome position: 66.85
GC content: 64.99
Gene sequence:
>774_bases ATGTATCTAAAGAAATTCGATCTGTCCGGCCGCGTGGCGGTGGTCACGGGGGCGGGGCAGGGCATCGGGCTTGCCTGCGC GGAAGCGCTTTGCGAAGCCGGTGCGGCGGTCCTGCTGACCGATATCAGCACGGAGCGCTGCGAGGCCGGCCGGGCGGCAC TCGCCGCCAAAGGATATACGGTCGAGATCGACCGTATCGACATCGGCGACAGCGCCTCCATCAATGCGGTGGCGGACCGG CTGGCAGATAGCGGCAGGGCGGCGGACATCCTCGTCGCAAATGCCGGTATCGCCCATGCCGGCGTTCCGGCCGAAGAGCT TTCGGACGCCGATTGGGACCGGATGATCGGCATCAATCTCAGCGGCGCCTTCCGATCTTGCCGGGCCTTCGGCAGGCACA TGCTCGCCAGGGGCAAGGGATCGATCGTCACGATCGGTTCCATGTCCGGCACGATCGTCAACCGGCCGCAGCAGCAGGTT CACTACAATGTGGCCAAGGCGGGCGTCCACCACCTGACGCGCTCGCTCGCAGCCGAGTGGGCGACCCGCGGCGTGCGGGT GAATTCCGTCGCGCCGACCTATATCGATACGCCGCTTCTGACTTTCGCCAAGGAAGACAAGCCGATGTACGAGCAATGGC TGGACATGACGCCGATGCATCGGCTCGGCCAGCCGGAGGAGATTGCCTCGGTCGTGCTGTTCCTTGCGTCCGACGCCTCC AGCCTCATGACGGGATCGATCGTTTCCGCGGATGCCGGCTACACTTGCTGGTAG
Upstream 100 bases:
>100_bases AGCACGGCTTTTACGAATACATGGAAACCCAGGCGGTCTATATCCAGCACGGTTGAGATGACAGCGACGGACCGGCGGCG CCCGGTCGGAAAGGAATGGT
Downstream 100 bases:
>100_bases CCGAGAAGCCCTCGTCCGCGTTTCGAATGCGGTCGAGGGCAGCACCTCTCGTGAGTGTGCAACCACGTCGGCGAGCAGTG CTCAACCTTGAATTATTATC
Product: short-chain dehydrogenase/reductase SDR
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MYLKKFDLSGRVAVVTGAGQGIGLACAEALCEAGAAVLLTDISTERCEAGRAALAAKGYTVEIDRIDIGDSASINAVADR LADSGRAADILVANAGIAHAGVPAEELSDADWDRMIGINLSGAFRSCRAFGRHMLARGKGSIVTIGSMSGTIVNRPQQQV HYNVAKAGVHHLTRSLAAEWATRGVRVNSVAPTYIDTPLLTFAKEDKPMYEQWLDMTPMHRLGQPEEIASVVLFLASDAS SLMTGSIVSADAGYTCW
Sequences:
>Translated_257_residues MYLKKFDLSGRVAVVTGAGQGIGLACAEALCEAGAAVLLTDISTERCEAGRAALAAKGYTVEIDRIDIGDSASINAVADR LADSGRAADILVANAGIAHAGVPAEELSDADWDRMIGINLSGAFRSCRAFGRHMLARGKGSIVTIGSMSGTIVNRPQQQV HYNVAKAGVHHLTRSLAAEWATRGVRVNSVAPTYIDTPLLTFAKEDKPMYEQWLDMTPMHRLGQPEEIASVVLFLASDAS SLMTGSIVSADAGYTCW >Mature_257_residues MYLKKFDLSGRVAVVTGAGQGIGLACAEALCEAGAAVLLTDISTERCEAGRAALAAKGYTVEIDRIDIGDSASINAVADR LADSGRAADILVANAGIAHAGVPAEELSDADWDRMIGINLSGAFRSCRAFGRHMLARGKGSIVTIGSMSGTIVNRPQQQV HYNVAKAGVHHLTRSLAAEWATRGVRVNSVAPTYIDTPLLTFAKEDKPMYEQWLDMTPMHRLGQPEEIASVVLFLASDAS SLMTGSIVSADAGYTCW
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=33.8403041825095, Blast_Score=131, Evalue=5e-31, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.5490196078431, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=34, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=30.9803921568627, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.2, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=27.3809523809524, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4504505, Length=256, Percent_Identity=31.640625, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=246, Percent_Identity=30.0813008130081, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=28.1632653061224, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503301, Length=259, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=28.740157480315, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=28.3505154639175, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=37.5, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=36.2204724409449, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.5220883534137, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1789208, Length=264, Percent_Identity=33.7121212121212, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=32.1705426356589, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.6032388663968, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=28.740157480315, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=29.0322580645161, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=31.0483870967742, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789057, Length=270, Percent_Identity=26.2962962962963, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=28.7937743190661, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=34.8178137651822, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.8725099601594, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=33.7301587301587, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=33.0677290836653, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=32.7067669172932, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=32.421875, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=31.7073170731707, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=30.6772908366534, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=31.8352059925094, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=31.9391634980989, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.4820717131474, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30.4, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=27.7566539923954, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=30.6513409961686, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=31.3207547169811, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.2238805970149, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.5454545454545, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=29.2592592592593, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.7878787878788, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=26.8939393939394, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203115, Length=201, Percent_Identity=29.8507462686567, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=30.2564102564103, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=24.907063197026, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=29.6577946768061, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=26.4367816091954, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=29.5, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=25.1908396946565, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17538182, Length=241, Percent_Identity=30.7053941908714, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=28.996282527881, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17508895, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17564282, Length=201, Percent_Identity=26.865671641791, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=24.8756218905473, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI32563809, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=29.3650793650794, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=29.0836653386454, Blast_Score=77, Evalue=2e-15, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.2, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.0597609561753, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=31.2977099236641, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=32.9317269076305, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=29.0322580645161, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=30.859375, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644337, Length=262, Percent_Identity=31.6793893129771, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=29.7029702970297, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI18859837, Length=256, Percent_Identity=31.25, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=29.2372881355932, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24665243, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221331218, Length=215, Percent_Identity=29.7674418604651, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581726, Length=215, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 27139; Mature: 27139
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLKKFDLSGRVAVVTGAGQGIGLACAEALCEAGAAVLLTDISTERCEAGRAALAAKGYT CCEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHCCCHHEEECCCE VEIDRIDIGDSASINAVADRLADSGRAADILVANAGIAHAGVPAEELSDADWDRMIGINL EEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECC SGAFRSCRAFGRHMLARGKGSIVTIGSMSGTIVNRPQQQVHYNVAKAGVHHLTRSLAAEW HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH ATRGVRVNSVAPTYIDTPLLTFAKEDKPMYEQWLDMTPMHRLGQPEEIASVVLFLASDAS HHCCEEECCCCCCHHCCCHHHHCCCCCHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCHH SLMTGSIVSADAGYTCW HHHCCCEEECCCCCCCC >Mature Secondary Structure MYLKKFDLSGRVAVVTGAGQGIGLACAEALCEAGAAVLLTDISTERCEAGRAALAAKGYT CCEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHCCCHHEEECCCE VEIDRIDIGDSASINAVADRLADSGRAADILVANAGIAHAGVPAEELSDADWDRMIGINL EEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECC SGAFRSCRAFGRHMLARGKGSIVTIGSMSGTIVNRPQQQVHYNVAKAGVHHLTRSLAAEW HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH ATRGVRVNSVAPTYIDTPLLTFAKEDKPMYEQWLDMTPMHRLGQPEEIASVVLFLASDAS HHCCEEECCCCCCHHCCCHHHHCCCCCHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCHH SLMTGSIVSADAGYTCW HHHCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]