Click here to switch to the map view.

The map label for this gene is alsB [C]

Identifier: 150397644

GI number: 150397644

Start: 2525809

End: 2526996

Strand: Reverse

Name: alsB [C]

Synonym: Smed_2444

Alternate gene names: 150397644

Gene position: 2526996-2525809 (Counterclockwise)

Preceding gene: 150397645

Following gene: 150397643

Centisome position: 66.82

GC content: 61.45

Gene sequence:

>1188_bases
TTGCTCAAAAAACTAGCACAAGCGTCGTTGGCAGCCGCAGTCAGCGCTATCGCACTCTTGCCGATGCTGGGCGCTGCGCC
GGCCGTCGCGCAGGAAGGCGAGGATATCGATATCACCATAGGCTGGGTACCGCCTGATATCACCGGCGTATTCAAGACGG
CCACCAACTTCTTCGAACTGGCTGCCCAGGACGCCAACAAGAATGGTTTTAACGTCAAGATCCTGACGAAGTCGCCGACC
AGCCCCACGGCTTTCGCCGAGCAGGTCAGCATCATCGAGGACATGATCCAGCGCAAGGTCGACCTGATCGCCGTTTCGCC
GGCTGAGGTCGCGACAGTCAAGCCGGCCCTGGTGCGCGCTACGCAAGCCGGCATTCCGGTCGTCGTCGTCAATCTGCTGG
AGCCGATCGACGGCGTCGACGTCTCGTCCTATATCGGATTCGACAACACGCAGGGCGCGGAAGTGAGCGCCTATTCGGTC
GTGGACTATTTCGGGGGTCCGGGTGTGCTCGGCACCGGCGAAAAGGTCGATGTCGAGCCTGGCACCTATCTCGATCTGAA
GTTCTGGGAGGATCTCGCTTCCAAGCTCTCGGCGGAGGACAAGGCAAAGATCAAGGCCCGCGGCGCCATCATCGAGGGCG
TTGCCGGCGGCTTTTTCTCCACGGCTCGCCTCAACGGTTTCCGCAAGGTGCTCGAGCAGTTCCCGGGCATCGAGATCGTC
GGCGGCACTTGCGCGGGCGACTGGAACCGCGAGAAGGGCACCCGTTGCGCGGAGGATATCCTTCAGGGCAATCAGGATGA
TCTCGACTTCATCTGGGCGGCGTCGAACGAGATGGGACTCGGTGCGATGCTCGTGGCGGGGGCGCAGAACCGTCTCGAAA
CCACGCAGGACGGCGCCGAGATCGGCAACAAGAAGGTGGCCATCTTCACCAATGACGTTACCCCGGAATCGGTCGACCGC
ATCGCCGAGGGCAAGATGATTGCCGAAACAACCCACGGCTTTGCCGATTGGGGATGGTTCGGCACCAAGTTTGCCGTCGA
GCTCGCCTGCGGCCTGGAAGTGCCGAAGACCTTCGATATCCGCCCGCGCAGCGTCTACGAGGCGAATGCGCGCAACTTCT
ATCCGGAACCGAAGCTTGAGTCGATCGACTGGAAGGCCATCCGGGCGAACTGCAAGAAAGCCGACTGA

Upstream 100 bases:

>100_bases
TTGAATTACGAAATGTTACCATCTAGCATTCGTGCTGCGTGAGGTGTGGAAGTGCCGATCGGCGCCCGCAACGCGAGGGA
TTTACAAAGGGAGGGGAGCT

Downstream 100 bases:

>100_bases
GTCTCCTCTACAGCGCCGTGTGTCTTATCAGACGCACACAGGTCGCTGTAGCACTTTGATCTGCTGCATGTTTTTGTCCT
TTAATCGGATCCGATTAAAG

Product: putative periplasmic binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MLKKLAQASLAAAVSAIALLPMLGAAPAVAQEGEDIDITIGWVPPDITGVFKTATNFFELAAQDANKNGFNVKILTKSPT
SPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATVKPALVRATQAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSV
VDYFGGPGVLGTGEKVDVEPGTYLDLKFWEDLASKLSAEDKAKIKARGAIIEGVAGGFFSTARLNGFRKVLEQFPGIEIV
GGTCAGDWNREKGTRCAEDILQGNQDDLDFIWAASNEMGLGAMLVAGAQNRLETTQDGAEIGNKKVAIFTNDVTPESVDR
IAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDIRPRSVYEANARNFYPEPKLESIDWKAIRANCKKAD

Sequences:

>Translated_395_residues
MLKKLAQASLAAAVSAIALLPMLGAAPAVAQEGEDIDITIGWVPPDITGVFKTATNFFELAAQDANKNGFNVKILTKSPT
SPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATVKPALVRATQAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSV
VDYFGGPGVLGTGEKVDVEPGTYLDLKFWEDLASKLSAEDKAKIKARGAIIEGVAGGFFSTARLNGFRKVLEQFPGIEIV
GGTCAGDWNREKGTRCAEDILQGNQDDLDFIWAASNEMGLGAMLVAGAQNRLETTQDGAEIGNKKVAIFTNDVTPESVDR
IAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDIRPRSVYEANARNFYPEPKLESIDWKAIRANCKKAD
>Mature_395_residues
MLKKLAQASLAAAVSAIALLPMLGAAPAVAQEGEDIDITIGWVPPDITGVFKTATNFFELAAQDANKNGFNVKILTKSPT
SPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATVKPALVRATQAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSV
VDYFGGPGVLGTGEKVDVEPGTYLDLKFWEDLASKLSAEDKAKIKARGAIIEGVAGGFFSTARLNGFRKVLEQFPGIEIV
GGTCAGDWNREKGTRCAEDILQGNQDDLDFIWAASNEMGLGAMLVAGAQNRLETTQDGAEIGNKKVAIFTNDVTPESVDR
IAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDIRPRSVYEANARNFYPEPKLESIDWKAIRANCKKAD

Specific function: Part Of The Binding-Protein-Dependent Transport System Alsbac For D-Allose. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42254; Mature: 42254

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLAQASLAAAVSAIALLPMLGAAPAVAQEGEDIDITIGWVPPDITGVFKTATNFFEL
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
AAQDANKNGFNVKILTKSPTSPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATVKPALVRA
HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCHHHHHH
TQAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSVVDYFGGPGVLGTGEKVDVEP
HHCCCCEEEEEHHCCCCCCCCHHHCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCEEECCC
GTYLDLKFWEDLASKLSAEDKAKIKARGAIIEGVAGGFFSTARLNGFRKVLEQFPGIEIV
CCEEEHHHHHHHHHHCCCCHHHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHCCCEEEE
GGTCAGDWNREKGTRCAEDILQGNQDDLDFIWAASNEMGLGAMLVAGAQNRLETTQDGAE
ECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHCCCCHHH
IGNKKVAIFTNDVTPESVDRIAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDI
HCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHEEEEEEECCCCCCCCCC
RPRSVYEANARNFYPEPKLESIDWKAIRANCKKAD
CCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MLKKLAQASLAAAVSAIALLPMLGAAPAVAQEGEDIDITIGWVPPDITGVFKTATNFFEL
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
AAQDANKNGFNVKILTKSPTSPTAFAEQVSIIEDMIQRKVDLIAVSPAEVATVKPALVRA
HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCHHHHHH
TQAGIPVVVVNLLEPIDGVDVSSYIGFDNTQGAEVSAYSVVDYFGGPGVLGTGEKVDVEP
HHCCCCEEEEEHHCCCCCCCCHHHCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCEEECCC
GTYLDLKFWEDLASKLSAEDKAKIKARGAIIEGVAGGFFSTARLNGFRKVLEQFPGIEIV
CCEEEHHHHHHHHHHCCCCHHHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHCCCEEEE
GGTCAGDWNREKGTRCAEDILQGNQDDLDFIWAASNEMGLGAMLVAGAQNRLETTQDGAE
ECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHCCCCHHH
IGNKKVAIFTNDVTPESVDRIAEGKMIAETTHGFADWGWFGTKFAVELACGLEVPKTFDI
HCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHEEEEEEECCCCCCCCCC
RPRSVYEANARNFYPEPKLESIDWKAIRANCKKAD
CCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA