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The map label for this gene is nocR [H]

Identifier: 150397641

GI number: 150397641

Start: 2521611

End: 2522516

Strand: Reverse

Name: nocR [H]

Synonym: Smed_2441

Alternate gene names: 150397641

Gene position: 2522516-2521611 (Counterclockwise)

Preceding gene: 150397642

Following gene: 150397640

Centisome position: 66.7

GC content: 61.04

Gene sequence:

>906_bases
ATGAACATCAAGCAACTGGAAGTCCTGCGGACGCTGCTTGCAACCGGATCGACGGTCGCGAGCGCCAAGGCCATGGGCCT
TAGCCAGTCGGGTGTGAGCCGCATGTTGCAGCAGCTCGAGAGCGACTTGTCCATCACACTTTTCGTCCGGGACAAGGGCC
GCCTGATCCCGACCCCGGAGGCCACGGTTCTCGGCCGCGACGCTCAGAATGTGCTGCTCGCGATCGAGCGCATGTCCGGC
CATGCGGAGGATCTCCGCAACGGTGCTGCCGGACCGGAAATCGTGCGCATCGGGCTGCCGAGCAGCATGTGGGAGAATTT
CGCACCTGCCATGTTGATCGACTATGTTCGGGATTTTCCCGGCGTGCGCATCGAGACCTTCTTCGAGACGACGACTGCCA
TCACCAAGCTGGTCGAGGAACGCGTCATCGACCTCGGTTTTCTGCGCATCGAGGGCGAGACGGGGCCGTCCATTGCAATC
GACACGGTTGCGAGCGGCGAGAGCGTCTGTGTCGTCCCGGAGAACCATCCGCTAGCTGAACTGCCCGAGATCAACATCAC
GCATCTGCGAAACGTACCGCTGATCCTGATCGGCCGCCAGCGGCCGAACCGCATGGCTCTCGATCAGGCCTTCAAGCGGG
CAGGGGTAAAGCAGATGGTCAAGATCGAGACTCATACCAACAGCTCGGCCTGCTCCTATGTCGCGCATGGACTGGGCGTC
ACGATCATCAGCAGCTTCTACGCGAATCTGTACCGGCATCTTCCAGTCGTGCATCGACCGTTCGTTCCGCGCGCGACACA
GGAATTCGGACTGGTGCGCGCCGCCGGAGTTCCACTCTCCATCGCTGCGCAAGCGCTCAGCGGAGCCCTGAAGAAGCAGA
TTCAGCTTTCTCAAAGGGAACAATAG

Upstream 100 bases:

>100_bases
TGTTGGCGGCGAAAAGCATCCTCTGCCGGAGACCGGCGGCCTTCGCCTGAGGGCACCGCCGGCTGCCGCGACGAACACGC
TGCTTCGAAGGTGCCGAGCC

Downstream 100 bases:

>100_bases
ACCAGGATTCTGGTCATCCCGAACGTTGCGGCTCACAGCTCCCCGCTGCATAGAGCTATGACGAATATGCATAATATTGC
GCGCCAATCTCCATTCCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNIKQLEVLRTLLATGSTVASAKAMGLSQSGVSRMLQQLESDLSITLFVRDKGRLIPTPEATVLGRDAQNVLLAIERMSG
HAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFPGVRIETFFETTTAITKLVEERVIDLGFLRIEGETGPSIAI
DTVASGESVCVVPENHPLAELPEINITHLRNVPLILIGRQRPNRMALDQAFKRAGVKQMVKIETHTNSSACSYVAHGLGV
TIISSFYANLYRHLPVVHRPFVPRATQEFGLVRAAGVPLSIAAQALSGALKKQIQLSQREQ

Sequences:

>Translated_301_residues
MNIKQLEVLRTLLATGSTVASAKAMGLSQSGVSRMLQQLESDLSITLFVRDKGRLIPTPEATVLGRDAQNVLLAIERMSG
HAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFPGVRIETFFETTTAITKLVEERVIDLGFLRIEGETGPSIAI
DTVASGESVCVVPENHPLAELPEINITHLRNVPLILIGRQRPNRMALDQAFKRAGVKQMVKIETHTNSSACSYVAHGLGV
TIISSFYANLYRHLPVVHRPFVPRATQEFGLVRAAGVPLSIAAQALSGALKKQIQLSQREQ
>Mature_301_residues
MNIKQLEVLRTLLATGSTVASAKAMGLSQSGVSRMLQQLESDLSITLFVRDKGRLIPTPEATVLGRDAQNVLLAIERMSG
HAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFPGVRIETFFETTTAITKLVEERVIDLGFLRIEGETGPSIAI
DTVASGESVCVVPENHPLAELPEINITHLRNVPLILIGRQRPNRMALDQAFKRAGVKQMVKIETHTNSSACSYVAHGLGV
TIISSFYANLYRHLPVVHRPFVPRATQEFGLVRAAGVPLSIAAQALSGALKKQIQLSQREQ

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=292, Percent_Identity=28.0821917808219, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788296, Length=252, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=28.1124497991968, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI2367136, Length=275, Percent_Identity=24.7272727272727, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32852; Mature: 32852

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKQLEVLRTLLATGSTVASAKAMGLSQSGVSRMLQQLESDLSITLFVRDKGRLIPTPE
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
ATVLGRDAQNVLLAIERMSGHAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFP
CEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHCC
GVRIETFFETTTAITKLVEERVIDLGFLRIEGETGPSIAIDTVASGESVCVVPENHPLAE
CCEEEHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC
LPEINITHLRNVPLILIGRQRPNRMALDQAFKRAGVKQMVKIETHTNSSACSYVAHGLGV
CCCCCHHEECCCCEEEEECCCCCHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHH
TIISSFYANLYRHLPVVHRPFVPRATQEFGLVRAAGVPLSIAAQALSGALKKQIQLSQRE
HHHHHHHHHHHHHCCHHCCCCCCCCHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHCCC
Q
C
>Mature Secondary Structure
MNIKQLEVLRTLLATGSTVASAKAMGLSQSGVSRMLQQLESDLSITLFVRDKGRLIPTPE
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
ATVLGRDAQNVLLAIERMSGHAEDLRNGAAGPEIVRIGLPSSMWENFAPAMLIDYVRDFP
CEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHCC
GVRIETFFETTTAITKLVEERVIDLGFLRIEGETGPSIAIDTVASGESVCVVPENHPLAE
CCEEEHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC
LPEINITHLRNVPLILIGRQRPNRMALDQAFKRAGVKQMVKIETHTNSSACSYVAHGLGV
CCCCCHHEECCCCEEEEECCCCCHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHH
TIISSFYANLYRHLPVVHRPFVPRATQEFGLVRAAGVPLSIAAQALSGALKKQIQLSQRE
HHHHHHHHHHHHHCCHHCCCCCCCCHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]