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The map label for this gene is rbsC [H]

Identifier: 150397642

GI number: 150397642

Start: 2522756

End: 2523805

Strand: Reverse

Name: rbsC [H]

Synonym: Smed_2442

Alternate gene names: 150397642

Gene position: 2523805-2522756 (Counterclockwise)

Preceding gene: 150397643

Following gene: 150397641

Centisome position: 66.73

GC content: 63.24

Gene sequence:

>1050_bases
ATGCATATGCGTGCGGAAAAGAAACCGGACACCAAGGCCGGTGCGGCTGGTGGGCGTAAAACGAAATTGAAGGCGATCGT
CTTTCAGGCCGGGCCGCTGATCGCCCTTGTCCTGTTGATGGCTTACCTCGCTTTTGCGACATCCAACTTCCTGACGTTCG
ACAACCTTTCCAACGTGGCGCGCCAGTCCGCCTTCGTTGCCATTATCGCGGTCGGGCAGACATTCGTCATCCTGACCGGC
GGCATCGACCTGTCAGTGGCTGCCATCGCCGCACTTGCCGCATCGATAACCGCCGTCCTGCTCACGCAGCCGCTCGTGCT
CTTCGGGGTCGATTTCGGTTTCGTGCCGCCGCCGGTGGCCGTCCTCATAGGGCTTTTCATCGGGGTGGCTGCCGGTGCAA
TCAACGGCTGGCTGATTTCCAAATTCAAGATCCCGGACTTCATCGCGACACTCGGCACGATGACGGCCTTTCGCGGCGCC
GCGCTGCTGGTCACCGATGGCCTGCCGGTCCCCTCGTTCAACGCCGGCCGGCAACTTCCCGAAACGCTGATCTGGGTCGG
CGGCGGTCAGCTCTTCGGCGTTCCGGTGAGCGCGCTCATCGCGCTGCTCTGCGCGGCCGCCGGCTGGTACGTGCTTCGCT
ACACCGCGCTCGGGCGGGCGATCTATGCCGTCGGCGGTAACCGTGCGGCCGCCCATTCCTCCGGCATCAGTATTTCGCGG
ACCAAGATCATGACCTATGCGATATCGGGCCTGCTGGCCGCGATCGCCGGCATCATCCTCGTCGGGCGCCTCAATTCGGC
CAATGCTTTGATGGCGGAGGGCGAAGAACTGCGCTCCATCGCTTCCGTCGTGATCGGGGGCACCAATCTCTTCGGCGGCG
AAGGCGGAGTATGGGGATCGATCATCGGCGCGGCCATCATCGGCGTGCTCGGCAACGGTCTCAACCTGCTCGATGTGAGT
CCGTTCTGGCAGCGCATCGCGCAGGGCATCGTCATCGTGGTCGTCGTGATCTTCGATCAGTGGCGCCGTCGCAGCATGAC
ACGCGTTTAG

Upstream 100 bases:

>100_bases
TGCGCGGTTTTCCGCCAGCATCCCGCTCCAACCTGTTGGAAACGATCACGATGATTTCAGGTCGATCCGACCTAAAATCA
TCGTGATCCAGGGAGTGGGA

Downstream 100 bases:

>100_bases
AGCGGGACGAGGAAAGCGGGTGCGGTTTCCGCCCGCACCGCGCTCCGGCGTGGGCCTGCCGGAAGGCGCAGGCCGACGCG
GCGCAGAAAAAAGTACCAAA

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MHMRAEKKPDTKAGAAGGRKTKLKAIVFQAGPLIALVLLMAYLAFATSNFLTFDNLSNVARQSAFVAIIAVGQTFVILTG
GIDLSVAAIAALAASITAVLLTQPLVLFGVDFGFVPPPVAVLIGLFIGVAAGAINGWLISKFKIPDFIATLGTMTAFRGA
ALLVTDGLPVPSFNAGRQLPETLIWVGGGQLFGVPVSALIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISR
TKIMTYAISGLLAAIAGIILVGRLNSANALMAEGEELRSIASVVIGGTNLFGGEGGVWGSIIGAAIIGVLGNGLNLLDVS
PFWQRIAQGIVIVVVVIFDQWRRRSMTRV

Sequences:

>Translated_349_residues
MHMRAEKKPDTKAGAAGGRKTKLKAIVFQAGPLIALVLLMAYLAFATSNFLTFDNLSNVARQSAFVAIIAVGQTFVILTG
GIDLSVAAIAALAASITAVLLTQPLVLFGVDFGFVPPPVAVLIGLFIGVAAGAINGWLISKFKIPDFIATLGTMTAFRGA
ALLVTDGLPVPSFNAGRQLPETLIWVGGGQLFGVPVSALIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISR
TKIMTYAISGLLAAIAGIILVGRLNSANALMAEGEELRSIASVVIGGTNLFGGEGGVWGSIIGAAIIGVLGNGLNLLDVS
PFWQRIAQGIVIVVVVIFDQWRRRSMTRV
>Mature_349_residues
MHMRAEKKPDTKAGAAGGRKTKLKAIVFQAGPLIALVLLMAYLAFATSNFLTFDNLSNVARQSAFVAIIAVGQTFVILTG
GIDLSVAAIAALAASITAVLLTQPLVLFGVDFGFVPPPVAVLIGLFIGVAAGAINGWLISKFKIPDFIATLGTMTAFRGA
ALLVTDGLPVPSFNAGRQLPETLIWVGGGQLFGVPVSALIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISR
TKIMTYAISGLLAAIAGIILVGRLNSANALMAEGEELRSIASVVIGGTNLFGGEGGVWGSIIGAAIIGVLGNGLNLLDVS
PFWQRIAQGIVIVVVVIFDQWRRRSMTRV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=327, Percent_Identity=42.8134556574924, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=40.1234567901235, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1789992, Length=392, Percent_Identity=33.4183673469388, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790524, Length=333, Percent_Identity=34.8348348348348, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI145693152, Length=331, Percent_Identity=33.8368580060423, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI87082395, Length=326, Percent_Identity=36.5030674846626, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI145693214, Length=270, Percent_Identity=39.2592592592593, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787793, Length=304, Percent_Identity=30.5921052631579, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=33.8461538461538, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=30.1694915254237, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36143; Mature: 36143

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMRAEKKPDTKAGAAGGRKTKLKAIVFQAGPLIALVLLMAYLAFATSNFLTFDNLSNVA
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHH
RQSAFVAIIAVGQTFVILTGGIDLSVAAIAALAASITAVLLTQPLVLFGVDFGFVPPPVA
HHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHH
VLIGLFIGVAAGAINGWLISKFKIPDFIATLGTMTAFRGAALLVTDGLPVPSFNAGRQLP
HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
ETLIWVGGGQLFGVPVSALIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISR
CCEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEHH
TKIMTYAISGLLAAIAGIILVGRLNSANALMAEGEELRSIASVVIGGTNLFGGEGGVWGS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCEECCCCCCHHHH
IIGAAIIGVLGNGLNLLDVSPFWQRIAQGIVIVVVVIFDQWRRRSMTRV
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHMRAEKKPDTKAGAAGGRKTKLKAIVFQAGPLIALVLLMAYLAFATSNFLTFDNLSNVA
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHH
RQSAFVAIIAVGQTFVILTGGIDLSVAAIAALAASITAVLLTQPLVLFGVDFGFVPPPVA
HHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCHHH
VLIGLFIGVAAGAINGWLISKFKIPDFIATLGTMTAFRGAALLVTDGLPVPSFNAGRQLP
HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
ETLIWVGGGQLFGVPVSALIALLCAAAGWYVLRYTALGRAIYAVGGNRAAAHSSGISISR
CCEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEHH
TKIMTYAISGLLAAIAGIILVGRLNSANALMAEGEELRSIASVVIGGTNLFGGEGGVWGS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCEECCCCCCHHHH
IIGAAIIGVLGNGLNLLDVSPFWQRIAQGIVIVVVVIFDQWRRRSMTRV
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]