| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397591
Identifier: 150397591
GI number: 150397591
Start: 2467002
End: 2468108
Strand: Direct
Name: 150397591
Synonym: Smed_2391
Alternate gene names: NA
Gene position: 2467002-2468108 (Clockwise)
Preceding gene: 150397576
Following gene: 150397598
Centisome position: 65.23
GC content: 56.28
Gene sequence:
>1107_bases ATGCGCAAGGGTGGCGTTAGATCTACCGTCGAAGCAGAGAATACACTGGTGTTCGAACTTCGCCGCGGCGCGATTACGAA TAACGGCGCCACACCATGGTGGGTTTCCGCCACTGTTGGGACGAGCACCGTACCGCAGACTTTCAAGTTCATGATGGACA CCGGAACAACCAACACATGGGTTACGGCGAAGAGCTGCTCCACCAGTGAATGCACACAGCACGATTCCTTCGACGAAACC GCGTCCTCGACCTTCGTCTGGCAAGACCAGTCACTGACACCCATCGACTTCAGCGGTTGGGGGAACATGGACGTCAACCT CGGAAATGACGTATGGGTTCTGTCTGACAAGAACGCCATCGACCAGGACGTCACCGTCGACTTCTGGCTCAGCCAGTCCT ATTCCGGGGCCCGTTTTGGCGAACTTATCCAGGATGGGTTCATCGCCTGCGGTCCCTACGGTGACAATTCCCGGTCGAAT TTGATTTTCGACGCGCTGTGGTACTCCGGTGCACTGGCTTCGCCGTGGATGTCCTATTGGGTCGATTACACGATCGACGG TGCAGCAGTCGACAGCGGCGAGATGATTTTTGGCGGCAGCAATGCCGACAAATACGACCCGGACACTGTTATCTCCCTCG ATATCGTACCGGGAATCTGGACTCACATGGGCGATTCGATCGTCGTTGACGGTGCCGAGATATTTACGTCTCCCGCACTG CTGATCGACACGGGTGCCTCTGAAATCAAAGGAGAGCAGGCGGAGATCGATAAATTGATTGCCGCAGTAACGCTGGACGG GCAGCTGCCGCTTTCTCCCGACAACCCGGATCACTATGCCTATCCCGACCTGGTCTTCAATCTTGGAAAGACCAGCGACG GCAGCACCGGGCAGTTGGTCTTCCCGCCCCGCGCCTATTTCAACTATATCGAGGCAGGCACAGACCAAGGAAAATGGCAG ATTGCGATGACCGTTCTTGAAGACCTTGGAGAAAACTCCCTGATCTTCGGCCGCAATCTTCTCGATCGGCTGTATTCGGA GTGGGAATACGACACCTCGGGCACGTCGGTCGCCGGGAAAACCATCCGGCTGGCACAACGGGTCTAG
Upstream 100 bases:
>100_bases ATTGCAAAATGTCAAGTATGAAAAAGCTAGTAGCAATGAAAGAACGAACATGAAAAAGAACGAAATTATACTTTCGCAAA GAGAGGTGTATCGGACAAAG
Downstream 100 bases:
>100_bases TTTAACCAGGCGCCGGGAGGACATGTCCTCCCGGCGCGCCCAAAACGATGGAAGGCCCGGCGCTTGGCGCCGGGCCTTCT GGATTACCTTCGAAAAGAAC
Product: peptidase A1 pepsin
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MRKGGVRSTVEAENTLVFELRRGAITNNGATPWWVSATVGTSTVPQTFKFMMDTGTTNTWVTAKSCSTSECTQHDSFDET ASSTFVWQDQSLTPIDFSGWGNMDVNLGNDVWVLSDKNAIDQDVTVDFWLSQSYSGARFGELIQDGFIACGPYGDNSRSN LIFDALWYSGALASPWMSYWVDYTIDGAAVDSGEMIFGGSNADKYDPDTVISLDIVPGIWTHMGDSIVVDGAEIFTSPAL LIDTGASEIKGEQAEIDKLIAAVTLDGQLPLSPDNPDHYAYPDLVFNLGKTSDGSTGQLVFPPRAYFNYIEAGTDQGKWQ IAMTVLEDLGENSLIFGRNLLDRLYSEWEYDTSGTSVAGKTIRLAQRV
Sequences:
>Translated_368_residues MRKGGVRSTVEAENTLVFELRRGAITNNGATPWWVSATVGTSTVPQTFKFMMDTGTTNTWVTAKSCSTSECTQHDSFDET ASSTFVWQDQSLTPIDFSGWGNMDVNLGNDVWVLSDKNAIDQDVTVDFWLSQSYSGARFGELIQDGFIACGPYGDNSRSN LIFDALWYSGALASPWMSYWVDYTIDGAAVDSGEMIFGGSNADKYDPDTVISLDIVPGIWTHMGDSIVVDGAEIFTSPAL LIDTGASEIKGEQAEIDKLIAAVTLDGQLPLSPDNPDHYAYPDLVFNLGKTSDGSTGQLVFPPRAYFNYIEAGTDQGKWQ IAMTVLEDLGENSLIFGRNLLDRLYSEWEYDTSGTSVAGKTIRLAQRV >Mature_368_residues MRKGGVRSTVEAENTLVFELRRGAITNNGATPWWVSATVGTSTVPQTFKFMMDTGTTNTWVTAKSCSTSECTQHDSFDET ASSTFVWQDQSLTPIDFSGWGNMDVNLGNDVWVLSDKNAIDQDVTVDFWLSQSYSGARFGELIQDGFIACGPYGDNSRSN LIFDALWYSGALASPWMSYWVDYTIDGAAVDSGEMIFGGSNADKYDPDTVISLDIVPGIWTHMGDSIVVDGAEIFTSPAL LIDTGASEIKGEQAEIDKLIAAVTLDGQLPLSPDNPDHYAYPDLVFNLGKTSDGSTGQLVFPPRAYFNYIEAGTDQGKWQ IAMTVLEDLGENSLIFGRNLLDRLYSEWEYDTSGTSVAGKTIRLAQRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4506475, Length=279, Percent_Identity=26.5232974910394, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI119372298, Length=284, Percent_Identity=29.2253521126761, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI23943854, Length=285, Percent_Identity=29.1228070175439, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI119372302, Length=284, Percent_Identity=29.2253521126761, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI4503145, Length=262, Percent_Identity=27.0992366412214, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573989, Length=321, Percent_Identity=26.791277258567, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI20129385, Length=343, Percent_Identity=26.2390670553936, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI19921120, Length=301, Percent_Identity=26.2458471760797, Blast_Score=72, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40230; Mature: 40230
Theoretical pI: Translated: 3.94; Mature: 3.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGGVRSTVEAENTLVFELRRGAITNNGATPWWVSATVGTSTVPQTFKFMMDTGTTNTW CCCCCCCCEECCCCEEEEEEECCEEECCCCCCEEEEEECCCCCCHHHHHHEEECCCCCEE VTAKSCSTSECTQHDSFDETASSTFVWQDQSLTPIDFSGWGNMDVNLGNDVWVLSDKNAI EEECCCCCCHHCCCCCCCHHCCCEEEECCCCCCCEEECCCCCEEEECCCEEEEEECCCCC DQDVTVDFWLSQSYSGARFGELIQDGFIACGPYGDNSRSNLIFDALWYSGALASPWMSYW CCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCCCCCCCCEEEEEHHHCCCCCCCHHHHE VDYTIDGAAVDSGEMIFGGSNADKYDPDTVISLDIVPGIWTHMGDSIVVDGAEIFTSPAL EEEEECCEEECCCCEEEECCCCCCCCCCCEEEEECCCCHHHHCCCEEEEECHHHHCCCEE LIDTGASEIKGEQAEIDKLIAAVTLDGQLPLSPDNPDHYAYPDLVFNLGKTSDGSTGQLV EEECCHHHHCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCEEE FPPRAYFNYIEAGTDQGKWQIAMTVLEDLGENSLIFGRNLLDRLYSEWEYDTSGTSVAGK ECCHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCC TIRLAQRV EEEEECCC >Mature Secondary Structure MRKGGVRSTVEAENTLVFELRRGAITNNGATPWWVSATVGTSTVPQTFKFMMDTGTTNTW CCCCCCCCEECCCCEEEEEEECCEEECCCCCCEEEEEECCCCCCHHHHHHEEECCCCCEE VTAKSCSTSECTQHDSFDETASSTFVWQDQSLTPIDFSGWGNMDVNLGNDVWVLSDKNAI EEECCCCCCHHCCCCCCCHHCCCEEEECCCCCCCEEECCCCCEEEECCCEEEEEECCCCC DQDVTVDFWLSQSYSGARFGELIQDGFIACGPYGDNSRSNLIFDALWYSGALASPWMSYW CCCCEEEEEECCCCCCCHHHHHHHCCCEEECCCCCCCCCCEEEEEHHHCCCCCCCHHHHE VDYTIDGAAVDSGEMIFGGSNADKYDPDTVISLDIVPGIWTHMGDSIVVDGAEIFTSPAL EEEEECCEEECCCCEEEECCCCCCCCCCCEEEEECCCCHHHHCCCEEEEECHHHHCCCEE LIDTGASEIKGEQAEIDKLIAAVTLDGQLPLSPDNPDHYAYPDLVFNLGKTSDGSTGQLV EEECCHHHHCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCEEE FPPRAYFNYIEAGTDQGKWQIAMTVLEDLGENSLIFGRNLLDRLYSEWEYDTSGTSVAGK ECCHHHHHHHHCCCCCCCEEEHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCC TIRLAQRV EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA