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The map label for this gene is ycjN [C]

Identifier: 150397558

GI number: 150397558

Start: 2433714

End: 2435039

Strand: Reverse

Name: ycjN [C]

Synonym: Smed_2358

Alternate gene names: 150397558

Gene position: 2435039-2433714 (Counterclockwise)

Preceding gene: 150397559

Following gene: 150397557

Centisome position: 64.39

GC content: 61.69

Gene sequence:

>1326_bases
ATGAACTTGAGAACTTTCCTGCTGGGCACGTGCTCGGCAGCCGCACTGGCCGGCTTGACTCACGCGGGCTGGGCCCAAGC
GGAGACCCTGACCATTGCCACCGTGAACAATGGCGACATGATCCGGATGCAGAAGCTGACGGACGATTTCACGTCGAAGA
ACCCGGACATCCAACTCGAGTGGGTCACTCTTGAGGAAAACGTCCTGCGCCAGCGCGTCACGACGGACATTGCGACCAAG
GGCGGTCAGTACGACATCATGACGATCGGCACCTATGAAGTGCCGATCTGGGCGAAACAGGGCTGGCTCCTGCCTCTGGA
CAATCTCGGCCCCGAATACGACGTAGACGACCTTCTGCCGGCGATCCGCAGCGGCCTGACCATCGATGGCAAGCTTTATG
CCGCGCCCTTCTACGGCGAAAGCTCGATGGTCATGTATCGCAAGGACCTGTTCGAGAAGGCGGGTCTCACCATGCCCGAT
GCGCCGACCTGGGAATTCGTTGCCGAAGCGGCTCGCAAGATCACCGACAAGAGCAACGAGATCTACGGCATCTGCCTTCG
CGGAAAGGCTGGATGGGGCGAGAACATGGCCTTCCTGACGGCCACGGCAAACGCCTTTGGCGCCCGCTGGTTCGATGAGA
ACTGGAAGCCGCAATTCGATCAGCCGGAGTGGAAGAACGCTCTCGACTTCTACGTCAAGCTGATGAATGACGCCGGCCCC
CCCGGTGCCTCGTCCAACGGCTTCAACGAAAACCTGTCGCTGTTCCAGACCGGCAAGTGCGGGATGTGGATCGACGCGAC
CGTCGCCGCCTCCTTCGTCACAAATCCGAAGGAGTCGACTGTCGCCGACAAGGTTGGTTTCGCGCTCGCTCCCGATACCG
GCCTCGGAAAGCGCGGCAACTGGCTCTGGGCCTGGAACCTCGCGGTTCCGGCGGGCACGCAGAAGGCCGAAGCGGCGCAG
AAGTTCATCGCCTGGGCAACGGGCAAGGAATATCTGAATCTGGTTGCCGAGAAGGAGGGCTGGGCGAATGTTCCTCCCGG
CACCCGCATCTCTCTCTATGAGAACCCGGAATACCAGAAGGCGGCGCCCTTCGCGAAGATGACGCTGGACTCGATCAATG
CGGCCGACCCGAAGAACCCGGCGGTGAAGCCGGTGCCATATGTCGGCGTTCAGTTCGTGGCGATCCCGGAATTCCAGGGC
CTCGGCACGGCGGTCGGGCAGGTATTCTCGGCAGCTTTGGCCGGCCAGATGAGCGTCGACCAGGCACTCGCGAGCGCACA
GCAGCTGTCGACCCGCGAAATGACCAAGGCCGGCTACATCAAGTGA

Upstream 100 bases:

>100_bases
CCCCGCATCGGGGTGAAAATTGCGGATTGACATTTAGGGTCATTCGGTGAGTAATTGCTCACGAGCGAGGCAAATGCTCA
TTTCTTCTGGGAGGAAGTCG

Downstream 100 bases:

>100_bases
GCTCCCAAGGAGCCGGGGCTCCCGCTGGAAACAGCTGCCCTCCGGCTACCTCCAGAGCGGGACGGGGAAAGGGGCCATAC
CTGCCTTCGATCCGCGTTCC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MNLRTFLLGTCSAAALAGLTHAGWAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLEWVTLEENVLRQRVTTDIATK
GGQYDIMTIGTYEVPIWAKQGWLLPLDNLGPEYDVDDLLPAIRSGLTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPD
APTWEFVAEAARKITDKSNEIYGICLRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGP
PGASSNGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGNWLWAWNLAVPAGTQKAEAAQ
KFIAWATGKEYLNLVAEKEGWANVPPGTRISLYENPEYQKAAPFAKMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQG
LGTAVGQVFSAALAGQMSVDQALASAQQLSTREMTKAGYIK

Sequences:

>Translated_441_residues
MNLRTFLLGTCSAAALAGLTHAGWAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLEWVTLEENVLRQRVTTDIATK
GGQYDIMTIGTYEVPIWAKQGWLLPLDNLGPEYDVDDLLPAIRSGLTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPD
APTWEFVAEAARKITDKSNEIYGICLRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGP
PGASSNGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGNWLWAWNLAVPAGTQKAEAAQ
KFIAWATGKEYLNLVAEKEGWANVPPGTRISLYENPEYQKAAPFAKMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQG
LGTAVGQVFSAALAGQMSVDQALASAQQLSTREMTKAGYIK
>Mature_441_residues
MNLRTFLLGTCSAAALAGLTHAGWAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLEWVTLEENVLRQRVTTDIATK
GGQYDIMTIGTYEVPIWAKQGWLLPLDNLGPEYDVDDLLPAIRSGLTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPD
APTWEFVAEAARKITDKSNEIYGICLRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGP
PGASSNGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGNWLWAWNLAVPAGTQKAEAAQ
KFIAWATGKEYLNLVAEKEGWANVPPGTRISLYENPEYQKAAPFAKMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQG
LGTAVGQVFSAALAGQMSVDQALASAQQLSTREMTKAGYIK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=297, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48132; Mature: 48132

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRTFLLGTCSAAALAGLTHAGWAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLE
CCCEEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHCCCCCEEEE
WVTLEENVLRQRVTTDIATKGGQYDIMTIGTYEVPIWAKQGWLLPLDNLGPEYDVDDLLP
EEECCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCEEEHHCCCCCCCHHHHHH
AIRSGLTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPDAPTWEFVAEAARKITDKSNE
HHHCCCEECCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
IYGICLRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGP
EEEEEEECCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PGASSNGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGN
CCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCCCCC
WLWAWNLAVPAGTQKAEAAQKFIAWATGKEYLNLVAEKEGWANVPPGTRISLYENPEYQK
EEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHH
AAPFAKMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQGLGTAVGQVFSAALAGQMSVD
HCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHH
QALASAQQLSTREMTKAGYIK
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNLRTFLLGTCSAAALAGLTHAGWAQAETLTIATVNNGDMIRMQKLTDDFTSKNPDIQLE
CCCEEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHCCCCCEEEE
WVTLEENVLRQRVTTDIATKGGQYDIMTIGTYEVPIWAKQGWLLPLDNLGPEYDVDDLLP
EEECCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCEEEHHCCCCCCCHHHHHH
AIRSGLTIDGKLYAAPFYGESSMVMYRKDLFEKAGLTMPDAPTWEFVAEAARKITDKSNE
HHHCCCEECCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
IYGICLRGKAGWGENMAFLTATANAFGARWFDENWKPQFDQPEWKNALDFYVKLMNDAGP
EEEEEEECCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PGASSNGFNENLSLFQTGKCGMWIDATVAASFVTNPKESTVADKVGFALAPDTGLGKRGN
CCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCCCCC
WLWAWNLAVPAGTQKAEAAQKFIAWATGKEYLNLVAEKEGWANVPPGTRISLYENPEYQK
EEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHH
AAPFAKMTLDSINAADPKNPAVKPVPYVGVQFVAIPEFQGLGTAVGQVFSAALAGQMSVD
HCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHH
QALASAQQLSTREMTKAGYIK
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]