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The map label for this gene is ycjO [C]

Identifier: 150397557

GI number: 150397557

Start: 2432649

End: 2433521

Strand: Reverse

Name: ycjO [C]

Synonym: Smed_2357

Alternate gene names: 150397557

Gene position: 2433521-2432649 (Counterclockwise)

Preceding gene: 150397558

Following gene: 150397556

Centisome position: 64.35

GC content: 59.56

Gene sequence:

>873_bases
ATGGCGACCTTGCACACCCGCTCCGCTGCGCGCCTGATGATCGCGCCTTCGGTGCTTCTGCTTCTGGCCTGGATGATCGT
GCCACTGGCCATGACGCTTTATTTCTCGCTGCTGCGCTACAATCTGCTGATGCCGGGAATGGAGGAGTTCGCAGGGCTCA
CCAACTACACCTATTTTCTGACCGACCCGGCCTTCTTCCAGGCGATCTTCAACACGCTCGCGATCGTTCTCGGCGTGCTC
TTCATTACCGTGGTGGGCGGTACCGCACTGGCCCTTCTTCTCGACCAGCCGATGTTCGGTCAGGGAATCGTGCGCATCCT
GGTGATCGCTCCTTTCCTGATCATGCCGACGGTGGCGGCGCTGGTGTGGAAGAACATGTTCATGAATCCCGTGAACGGGC
TCTTTGCCTGGCTTGCCAAGCTCCTGGGATTGCAGCCCTTCGATTTCCTCGCCAATGCGCCACTGCTTTCGATCATCCTG
ATCGTTGCCTGGCAATGGCTGCCTTTTGCCACGCTCATTCTGCTGACGGCATTGCAGTCACTCGACGAGGAGCAAAAGGA
GGCAGCGCAGATGGACGGTGCCGGCGCCGTGAGCCGCTTCATCTACCTCGTCCTGCCGCATCTCTCCCGTGCGATCACGG
TGGTCATCCTGATCCAGACGATCTTTCTGCTGTCGGTCTTCGCCGAAATTCTCGTCACCACCAATGGCGGTCCGGGTACG
CAGAGCACGAACCTGACATTCCTCGTCTACGCCCAGGCTCTTCTGCAGTTCGATGTGGGCGGCGCCTCGGCGGGCGGGAT
CATCGCGGTCATTCTCGCCAATATCGTCGCATTCTTCCTGATGCGCATGATCGGCAAGACGCTGGAGGCCTGA

Upstream 100 bases:

>100_bases
CGCGTTCCGCTCTGACTTTTCCGATTTAACCGGCTGCGCGTTTGGAACGGCGATGCGTGTGCCTTTCTCCGAACCGCGTC
GACTTCACACGGGGGACGCC

Downstream 100 bases:

>100_bases
TAGTCATGGCACGCAATGTTTCCACCGGGCGGAAGCTCATTACCACCGTGGTGGCCTGGACGATCGGAATCCTCATCTTT
TTCCCGATCCTCTGGACATT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MATLHTRSAARLMIAPSVLLLLAWMIVPLAMTLYFSLLRYNLLMPGMEEFAGLTNYTYFLTDPAFFQAIFNTLAIVLGVL
FITVVGGTALALLLDQPMFGQGIVRILVIAPFLIMPTVAALVWKNMFMNPVNGLFAWLAKLLGLQPFDFLANAPLLSIIL
IVAWQWLPFATLILLTALQSLDEEQKEAAQMDGAGAVSRFIYLVLPHLSRAITVVILIQTIFLLSVFAEILVTTNGGPGT
QSTNLTFLVYAQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA

Sequences:

>Translated_290_residues
MATLHTRSAARLMIAPSVLLLLAWMIVPLAMTLYFSLLRYNLLMPGMEEFAGLTNYTYFLTDPAFFQAIFNTLAIVLGVL
FITVVGGTALALLLDQPMFGQGIVRILVIAPFLIMPTVAALVWKNMFMNPVNGLFAWLAKLLGLQPFDFLANAPLLSIIL
IVAWQWLPFATLILLTALQSLDEEQKEAAQMDGAGAVSRFIYLVLPHLSRAITVVILIQTIFLLSVFAEILVTTNGGPGT
QSTNLTFLVYAQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA
>Mature_289_residues
ATLHTRSAARLMIAPSVLLLLAWMIVPLAMTLYFSLLRYNLLMPGMEEFAGLTNYTYFLTDPAFFQAIFNTLAIVLGVLF
ITVVGGTALALLLDQPMFGQGIVRILVIAPFLIMPTVAALVWKNMFMNPVNGLFAWLAKLLGLQPFDFLANAPLLSIILI
VAWQWLPFATLILLTALQSLDEEQKEAAQMDGAGAVSRFIYLVLPHLSRAITVVILIQTIFLLSVFAEILVTTNGGPGTQ
STNLTFLVYAQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=259, Percent_Identity=30.1158301158301, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790465, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789861, Length=293, Percent_Identity=22.8668941979522, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31571; Mature: 31439

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLHTRSAARLMIAPSVLLLLAWMIVPLAMTLYFSLLRYNLLMPGMEEFAGLTNYTYFL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEE
TDPAFFQAIFNTLAIVLGVLFITVVGGTALALLLDQPMFGQGIVRILVIAPFLIMPTVAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMNPVNGLFAWLAKLLGLQPFDFLANAPLLSIILIVAWQWLPFATLILLTALQS
HHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEEQKEAAQMDGAGAVSRFIYLVLPHLSRAITVVILIQTIFLLSVFAEILVTTNGGPGT
HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QSTNLTFLVYAQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATLHTRSAARLMIAPSVLLLLAWMIVPLAMTLYFSLLRYNLLMPGMEEFAGLTNYTYFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEE
TDPAFFQAIFNTLAIVLGVLFITVVGGTALALLLDQPMFGQGIVRILVIAPFLIMPTVAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMNPVNGLFAWLAKLLGLQPFDFLANAPLLSIILIVAWQWLPFATLILLTALQS
HHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEEQKEAAQMDGAGAVSRFIYLVLPHLSRAITVVILIQTIFLLSVFAEILVTTNGGPGT
HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QSTNLTFLVYAQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]