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The map label for this gene is opdE [H]

Identifier: 150397549

GI number: 150397549

Start: 2424491

End: 2424865

Strand: Reverse

Name: opdE [H]

Synonym: Smed_2349

Alternate gene names: 150397549

Gene position: 2424865-2424491 (Counterclockwise)

Preceding gene: 150397551

Following gene: 150397548

Centisome position: 64.12

GC content: 62.13

Gene sequence:

>375_bases
ATGGCAATCGAAGTGGCACAGGATGACACCCTTTCGGCCGAACGGGCGGTGACCCCGTGGGCTGCGGTCACCTGCCTCTC
GCTCCTGACCTTTCTCCTGGTCGGATTGGAGTTCATGCCGGTGAGCCTTCTGACGCCGATTGCCCGGGACCTGGCGATCA
CGGAAGGTCAGGCCGGACAGGCGATTGCCGTGTCGGGGCTCTTTGCCGTAATCACCAGCCTTTTCGGCAACACCCTCTTG
GCCAAGGTCGATCGGAGAACGGTCGTGTTGTTCTATACGGCGGTGCTGCCGCTTCGAGTTTGGCTGCGGCCCTCGCTCCC
ACGACATCAACGAAATCCTGTTCCGACCGACCGGCCAGCCGGTTTGAGGTGGTGA

Upstream 100 bases:

>100_bases
GACATTGGTGAATCCCATTCACTACAACATGCAGATTATAGCTTCTAGTCTGCCAAGGCCAGTCTGGCTATCTAGTCCCG
AAGTGAATTGGAGGCACAAC

Downstream 100 bases:

>100_bases
ACATGACATCGCTGCCGTTCACCGCCCCGTATTGCCGGAACTGCGCTAGCCGCCGCGGTTATGCTAATTGCCGCCCAAGC
GCAGAAAGCTTCGGAAGATT

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MAIEVAQDDTLSAERAVTPWAAVTCLSLLTFLLVGLEFMPVSLLTPIARDLAITEGQAGQAIAVSGLFAVITSLFGNTLL
AKVDRRTVVLFYTAVLPLRVWLRPSLPRHQRNPVPTDRPAGLRW

Sequences:

>Translated_124_residues
MAIEVAQDDTLSAERAVTPWAAVTCLSLLTFLLVGLEFMPVSLLTPIARDLAITEGQAGQAIAVSGLFAVITSLFGNTLL
AKVDRRTVVLFYTAVLPLRVWLRPSLPRHQRNPVPTDRPAGLRW
>Mature_123_residues
AIEVAQDDTLSAERAVTPWAAVTCLSLLTFLLVGLEFMPVSLLTPIARDLAITEGQAGQAIAVSGLFAVITSLFGNTLLA
KVDRRTVVLFYTAVLPLRVWLRPSLPRHQRNPVPTDRPAGLRW

Specific function: Regulates the expression of oprD which encodes the imipenem-specific porin [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ywfA [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=83, Percent_Identity=42.1686746987952, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 13536; Mature: 13405

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIEVAQDDTLSAERAVTPWAAVTCLSLLTFLLVGLEFMPVSLLTPIARDLAITEGQAGQ
CEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AIAVSGLFAVITSLFGNTLLAKVDRRTVVLFYTAVLPLRVWLRPSLPRHQRNPVPTDRPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GLRW
CCCC
>Mature Secondary Structure 
AIEVAQDDTLSAERAVTPWAAVTCLSLLTFLLVGLEFMPVSLLTPIARDLAITEGQAGQ
EEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AIAVSGLFAVITSLFGNTLLAKVDRRTVVLFYTAVLPLRVWLRPSLPRHQRNPVPTDRPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GLRW
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1427017; 10984043 [H]