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The map label for this gene is phyR [H]

Identifier: 150397547

GI number: 150397547

Start: 2422944

End: 2423738

Strand: Direct

Name: phyR [H]

Synonym: Smed_2347

Alternate gene names: 150397547

Gene position: 2422944-2423738 (Clockwise)

Preceding gene: 150397543

Following gene: 150397550

Centisome position: 64.07

GC content: 59.75

Gene sequence:

>795_bases
ATGACATTGTCCACCCGAATCGCTCCATTTCTTCCTTACCTACGCCGCTATTCCCGCGCGCTGACCGGCTCTCAGACCTC
CGGAGACGCCTATGTCGCGGCCGTGCTCGAGGCGCTCATCGCCGATACCTCAATCTTTCCGGAAGCAAGCAGCGACAGGG
TAGCCTTGTTCCGTCTCTTCACATCCATGTTCGGCTCGTCGTCCATCATGGTGCCGGAGCCGGTGTCGCCCTTTGCCTGG
GAGCAGCGTGCGTCGGTCAACCTCGCCGCCGTCTCGCCTCTCGCCCGTCAGGCCTTCCTGCTTGTATCGGTCGAGGGATT
TACCCCACAGGAAGCCGCCGAGGTCCTCGACGTAGATGCCGCGAAACTTGCTTCCCTTCTCGACCGAGCTTCCCAGGAAA
TTTCGCGCCAGGTCGCCACCGATATCATGATCATCGAAGACGAACCGCTGATCGCGATCGACATCGAGCAAATGGTCGAA
AGCCTCGGCCACACTGTGACGGGGATCGCCCGAACAAAAGACGAAGCCGTTGCCCTCTACGAGGCGACCAAGCCGAACAT
GGTACTCGCGGACATCCAACTCGCCGACGGCAGCTCGGGAATCGACGCGGTCAACGAAATCCTGCAAACGGCGGCCGTTC
CGGTAATTTTCATCACCGCATTCCCCGAGCGTCTGCTGACGGGTGAACGTCCCGAGCCCACATTCCTCGTCACCAAGCCA
TTCAATCCGGAAATGGTGAAGGCGCTGATCAGTCAGGCATTGTTCTTCAACGAAACGACCAAGGCTGCGGCCTGA

Upstream 100 bases:

>100_bases
CATAACGCCGGGAAAATTTGAAATGTTCCACAGCGGAACCTTTTTTTCGCCGGAACGTTTCCGCCACGATCCTTTTAGCC
TGGATTGAGGGAGTCCTTGC

Downstream 100 bases:

>100_bases
GTCGAGGGCGTAGCGTTTCCCGCTAAACAACGCTGAGGGAGAACGAAGCTAGAACAGGTCATGCTGCCCGTCGCCTCACG
GACAGCATGACTGCGATCGG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTLSTRIAPFLPYLRRYSRALTGSQTSGDAYVAAVLEALIADTSIFPEASSDRVALFRLFTSMFGSSSIMVPEPVSPFAW
EQRASVNLAAVSPLARQAFLLVSVEGFTPQEAAEVLDVDAAKLASLLDRASQEISRQVATDIMIIEDEPLIAIDIEQMVE
SLGHTVTGIARTKDEAVALYEATKPNMVLADIQLADGSSGIDAVNEILQTAAVPVIFITAFPERLLTGERPEPTFLVTKP
FNPEMVKALISQALFFNETTKAAA

Sequences:

>Translated_264_residues
MTLSTRIAPFLPYLRRYSRALTGSQTSGDAYVAAVLEALIADTSIFPEASSDRVALFRLFTSMFGSSSIMVPEPVSPFAW
EQRASVNLAAVSPLARQAFLLVSVEGFTPQEAAEVLDVDAAKLASLLDRASQEISRQVATDIMIIEDEPLIAIDIEQMVE
SLGHTVTGIARTKDEAVALYEATKPNMVLADIQLADGSSGIDAVNEILQTAAVPVIFITAFPERLLTGERPEPTFLVTKP
FNPEMVKALISQALFFNETTKAAA
>Mature_263_residues
TLSTRIAPFLPYLRRYSRALTGSQTSGDAYVAAVLEALIADTSIFPEASSDRVALFRLFTSMFGSSSIMVPEPVSPFAWE
QRASVNLAAVSPLARQAFLLVSVEGFTPQEAAEVLDVDAAKLASLLDRASQEISRQVATDIMIIEDEPLIAIDIEQMVES
LGHTVTGIARTKDEAVALYEATKPNMVLADIQLADGSSGIDAVNEILQTAAVPVIFITAFPERLLTGERPEPTFLVTKPF
NPEMVKALISQALFFNETTKAAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28482; Mature: 28351

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSTRIAPFLPYLRRYSRALTGSQTSGDAYVAAVLEALIADTSIFPEASSDRVALFRLF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
TSMFGSSSIMVPEPVSPFAWEQRASVNLAAVSPLARQAFLLVSVEGFTPQEAAEVLDVDA
HHHHCCCCEECCCCCCCCCHHHHCCCCHHHHCHHHHHEEEEEEECCCCHHHHHHHHCCCH
AKLASLLDRASQEISRQVATDIMIIEDEPLIAIDIEQMVESLGHTVTGIARTKDEAVALY
HHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEEHHHHHHHHCCCEEHHHHCCCCEEEEE
EATKPNMVLADIQLADGSSGIDAVNEILQTAAVPVIFITAFPERLLTGERPEPTFLVTKP
ECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECC
FNPEMVKALISQALFFNETTKAAA
CCHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
TLSTRIAPFLPYLRRYSRALTGSQTSGDAYVAAVLEALIADTSIFPEASSDRVALFRLF
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
TSMFGSSSIMVPEPVSPFAWEQRASVNLAAVSPLARQAFLLVSVEGFTPQEAAEVLDVDA
HHHHCCCCEECCCCCCCCCHHHHCCCCHHHHCHHHHHEEEEEEECCCCHHHHHHHHCCCH
AKLASLLDRASQEISRQVATDIMIIEDEPLIAIDIEQMVESLGHTVTGIARTKDEAVALY
HHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEEHHHHHHHHCCCEEHHHHCCCCEEEEE
EATKPNMVLADIQLADGSSGIDAVNEILQTAAVPVIFITAFPERLLTGERPEPTFLVTKP
ECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECC
FNPEMVKALISQALFFNETTKAAA
CCHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA