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The map label for this gene is dppC [H]

Identifier: 150397524

GI number: 150397524

Start: 2404983

End: 2405942

Strand: Reverse

Name: dppC [H]

Synonym: Smed_2324

Alternate gene names: 150397524

Gene position: 2405942-2404983 (Counterclockwise)

Preceding gene: 150397525

Following gene: 150397523

Centisome position: 63.62

GC content: 66.04

Gene sequence:

>960_bases
ATGAGTCTTGCCCCCGTAACACGCCCCCCCGAAACACCCCCCGAAACACGCCCGATGTCGCGGCGCGAATGGCTGCTTTC
CGACCGCCCCCAGTCGCGGACCCAGGCCCGGCTCGGCCGCGCCTATATGACCTGGCGGCGCTTCTCCGCCAACCGGCTTG
CGGTGCTCGGCCTGTGCATTCTGCTGGCGCTGATCTTCGTTGCCATCTTTGCCGATGCACTGGCGCCCTATAATCCGGTC
ATCGGAAATCTTGCCGGCGCGCGGCTTCTTCCACCCGGCAGCGAAGGCTACCTGCTCGGCACGGATGATCAGGGCCGTGA
TATTTTGTCCCGGCTGATCCACGGCTCGCGGCTGACGCTCCTCGTCGTCCTGCTCGTCGCAATCATCGCGGCTCCGGTCG
GGCTGATCGTCGGCGCCGTCGCGGGCTATGCCGGCGGTTGGATCGACGCGGTCCTCATGCGCATCACCGATATCTTCCTC
GCCTTTCCGAAACTCGTCCTGGCGCTCGCCTTCGTCGCGGCGCTCGGGCCGGGGATCGAGAATGCTGTCATCGCGATCGC
CATCACCTCCTGGCCGCCCTATGCGCGCATCGCACGGGCCGAAACGCTGACGGTTCGCCATTCCGATTATATCGCCGCGG
TGCGGCTGATGGGAGCATCGCCCCTGCGCATTATCTTCCGCCATGTCATGCCGATGTGCATGTCGTCGCTCATCGTACGC
GTGACGCTCGACATGGCCGGCATCATCCTGACGGCGGCGGGACTCGGCTTCCTCGGTCTCGGCGCCCAGCCGCCGCTGCC
GGAATGGGGCGCCATGATCGCCTCCGGCCGGCGCTTCATCCTTGATCAATGGTGGGTTGCGACCATGCCCGGGATCGCCA
TTCTGATCGTAAGCCTCGGCTTCAACCTGCTCGGAGACGGCCTGCGCGACGCGCTGGATCCGCGGGAGAGCGGCCAATGA

Upstream 100 bases:

>100_bases
CCGTTCTCGGCGGCACGATCATCATCGGATCGGTCTTCATCGGCATCAACCTCCTGTCCGATCTTCTCTACCGGACGCTG
GACCCGAGGACGCGCGCCCG

Downstream 100 bases:

>100_bases
GTCCGCTTCTGACTGTCGAGGATCTCCGGGTGCGGTTCCCGACACGCACCGGTGTCGTGGAGGCGGTGCGCGGCGTTTCC
TTTACGCTGGGGCGCGAGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSLAPVTRPPETPPETRPMSRREWLLSDRPQSRTQARLGRAYMTWRRFSANRLAVLGLCILLALIFVAIFADALAPYNPV
IGNLAGARLLPPGSEGYLLGTDDQGRDILSRLIHGSRLTLLVVLLVAIIAAPVGLIVGAVAGYAGGWIDAVLMRITDIFL
AFPKLVLALAFVAALGPGIENAVIAIAITSWPPYARIARAETLTVRHSDYIAAVRLMGASPLRIIFRHVMPMCMSSLIVR
VTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVATMPGIAILIVSLGFNLLGDGLRDALDPRESGQ

Sequences:

>Translated_319_residues
MSLAPVTRPPETPPETRPMSRREWLLSDRPQSRTQARLGRAYMTWRRFSANRLAVLGLCILLALIFVAIFADALAPYNPV
IGNLAGARLLPPGSEGYLLGTDDQGRDILSRLIHGSRLTLLVVLLVAIIAAPVGLIVGAVAGYAGGWIDAVLMRITDIFL
AFPKLVLALAFVAALGPGIENAVIAIAITSWPPYARIARAETLTVRHSDYIAAVRLMGASPLRIIFRHVMPMCMSSLIVR
VTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVATMPGIAILIVSLGFNLLGDGLRDALDPRESGQ
>Mature_318_residues
SLAPVTRPPETPPETRPMSRREWLLSDRPQSRTQARLGRAYMTWRRFSANRLAVLGLCILLALIFVAIFADALAPYNPVI
GNLAGARLLPPGSEGYLLGTDDQGRDILSRLIHGSRLTLLVVLLVAIIAAPVGLIVGAVAGYAGGWIDAVLMRITDIFLA
FPKLVLALAFVAALGPGIENAVIAIAITSWPPYARIARAETLTVRHSDYIAAVRLMGASPLRIIFRHVMPMCMSSLIVRV
TLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVATMPGIAILIVSLGFNLLGDGLRDALDPRESGQ

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=291, Percent_Identity=45.0171821305842, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1789964, Length=276, Percent_Identity=48.5507246376812, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1787054, Length=299, Percent_Identity=41.4715719063545, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=40.4166666666667, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787549, Length=273, Percent_Identity=39.1941391941392, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=35.0553505535055, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788505, Length=237, Percent_Identity=29.535864978903, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34298; Mature: 34167

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAPVTRPPETPPETRPMSRREWLLSDRPQSRTQARLGRAYMTWRRFSANRLAVLGLCI
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLALIFVAIFADALAPYNPVIGNLAGARLLPPGSEGYLLGTDDQGRDILSRLIHGSRLTL
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHH
LVVLLVAIIAAPVGLIVGAVAGYAGGWIDAVLMRITDIFLAFPKLVLALAFVAALGPGIE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NAVIAIAITSWPPYARIARAETLTVRHSDYIAAVRLMGASPLRIIFRHVMPMCMSSLIVR
CCEEEEEEECCCCHHHHHHHHEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVATMPGIAILIVSLG
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
FNLLGDGLRDALDPRESGQ
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLAPVTRPPETPPETRPMSRREWLLSDRPQSRTQARLGRAYMTWRRFSANRLAVLGLCI
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLALIFVAIFADALAPYNPVIGNLAGARLLPPGSEGYLLGTDDQGRDILSRLIHGSRLTL
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHH
LVVLLVAIIAAPVGLIVGAVAGYAGGWIDAVLMRITDIFLAFPKLVLALAFVAALGPGIE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NAVIAIAITSWPPYARIARAETLTVRHSDYIAAVRLMGASPLRIIFRHVMPMCMSSLIVR
CCEEEEEEECCCCHHHHHHHHEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVATMPGIAILIVSLG
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
FNLLGDGLRDALDPRESGQ
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]