| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is oppD [H]
Identifier: 150397523
GI number: 150397523
Start: 2404153
End: 2404986
Strand: Reverse
Name: oppD [H]
Synonym: Smed_2323
Alternate gene names: 150397523
Gene position: 2404986-2404153 (Counterclockwise)
Preceding gene: 150397524
Following gene: 150397522
Centisome position: 63.59
GC content: 62.95
Gene sequence:
>834_bases ATGAGTCCGCTTCTGACTGTCGAGGATCTCCGGGTGCGGTTCCCGACACGCACCGGTGTCGTGGAGGCGGTGCGCGGCGT TTCCTTTACGCTGGGGCGCGAGCGCCTGGGCATCGTCGGTGAAAGCGGCTCCGGTAAATCGCAGACGGGCCGCGCCATCA TGGGACTGACCCCGCCGCACGCGGAAGTAACGGCGAAGCGGCTCGCCTTCGAAGGGATCGATCTTCTTTCAGCCTCCCCG AAACGCCGGCGGGACTTGCGCGGCAAGCGCATCGCCATGATATTGCAGGATCCGAAATATTCATTGAATCCGGTGATGAG CATCGGACGGCAGATCGTCGAGACGTTGAAGCGACACGAGAAGATCGGCCGTGCGGAGGCGCGGGAGAGGGCGCTCGAAA TGCTTGCGGCGGTGCAGATCCGTGATGCTTCCCGCGTCTTCGATCTTTATCCGCACGAGGTGTCGGGCGGAATGGGGCAA CGGGCGATGATCGCTATGATGCTCGTTGCCGGACCGGAACTCCTGATCGCGGACGAGCCGACCTCGGCGCTCGACGTGAC GGTTCAGCTCGAGGTGCTGTCAATCCTCGACCGGCTGGTGGCGGAGCGCGGCATGGGACTGATTTTCGTCTCGCATGACC TGCGCCTCGTTTCGTCCTTCTGCGACCGCGTTCTCGTGATGTATGCGGGAAAGATCGTCGAGGAGATCGCCGCATCGGAG CTCGGCAAGGCAAAGCACCCCTATACCCAGGGTCTGCTGAACTGCATGCCGGTGATCGGGGCGGATCGTCATCCATTGCC GGTGCTCGACCGCAAGCCGGAGTGGGCACTATGA
Upstream 100 bases:
>100_bases TTGCGACCATGCCCGGGATCGCCATTCTGATCGTAAGCCTCGGCTTCAACCTGCTCGGAGACGGCCTGCGCGACGCGCTG GATCCGCGGGAGAGCGGCCA
Downstream 100 bases:
>100_bases CCGAGGCCGTATCCGTCGAAAATCTGAGCGTCGTCTTCGACGAGTTCAAAGCACTCGATGCCGTCAGCGTGGATGTAGGG AAGGGGAAATCCTTCGGGCT
Product: ABC transporter-like protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MSPLLTVEDLRVRFPTRTGVVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPPHAEVTAKRLAFEGIDLLSASP KRRRDLRGKRIAMILQDPKYSLNPVMSIGRQIVETLKRHEKIGRAEARERALEMLAAVQIRDASRVFDLYPHEVSGGMGQ RAMIAMMLVAGPELLIADEPTSALDVTVQLEVLSILDRLVAERGMGLIFVSHDLRLVSSFCDRVLVMYAGKIVEEIAASE LGKAKHPYTQGLLNCMPVIGADRHPLPVLDRKPEWAL
Sequences:
>Translated_277_residues MSPLLTVEDLRVRFPTRTGVVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPPHAEVTAKRLAFEGIDLLSASP KRRRDLRGKRIAMILQDPKYSLNPVMSIGRQIVETLKRHEKIGRAEARERALEMLAAVQIRDASRVFDLYPHEVSGGMGQ RAMIAMMLVAGPELLIADEPTSALDVTVQLEVLSILDRLVAERGMGLIFVSHDLRLVSSFCDRVLVMYAGKIVEEIAASE LGKAKHPYTQGLLNCMPVIGADRHPLPVLDRKPEWAL >Mature_276_residues SPLLTVEDLRVRFPTRTGVVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPPHAEVTAKRLAFEGIDLLSASPK RRRDLRGKRIAMILQDPKYSLNPVMSIGRQIVETLKRHEKIGRAEARERALEMLAAVQIRDASRVFDLYPHEVSGGMGQR AMIAMMLVAGPELLIADEPTSALDVTVQLEVLSILDRLVAERGMGLIFVSHDLRLVSSFCDRVLVMYAGKIVEEIAASEL GKAKHPYTQGLLNCMPVIGADRHPLPVLDRKPEWAL
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21729873, Length=242, Percent_Identity=26.8595041322314, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI15149474, Length=242, Percent_Identity=26.8595041322314, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI156105685, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=248, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=248, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=248, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=22.2748815165877, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994883, Length=261, Percent_Identity=47.1264367816092, Blast_Score=228, Evalue=2e-61, Organism=Escherichia coli, GI1787759, Length=270, Percent_Identity=44.8148148148148, Blast_Score=228, Evalue=4e-61, Organism=Escherichia coli, GI1789963, Length=268, Percent_Identity=44.7761194029851, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=43.984962406015, Blast_Score=205, Evalue=2e-54, Organism=Escherichia coli, GI1788506, Length=267, Percent_Identity=44.9438202247191, Blast_Score=201, Evalue=5e-53, Organism=Escherichia coli, GI1787548, Length=266, Percent_Identity=38.7218045112782, Blast_Score=187, Evalue=5e-49, Organism=Escherichia coli, GI1787500, Length=271, Percent_Identity=42.4354243542435, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1789962, Length=269, Percent_Identity=39.0334572490706, Blast_Score=180, Evalue=8e-47, Organism=Escherichia coli, GI1787758, Length=284, Percent_Identity=36.2676056338028, Blast_Score=147, Evalue=6e-37, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=39.0557939914163, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=35.3211009174312, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=37.3540856031128, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=30.5019305019305, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=31.7647058823529, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=32.4200913242009, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789672, Length=255, Percent_Identity=29.4117647058824, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=32.3651452282158, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=30.5309734513274, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87081834, Length=238, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789991, Length=242, Percent_Identity=29.7520661157025, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786398, Length=237, Percent_Identity=28.6919831223629, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=32.5892857142857, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=29.1497975708502, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787029, Length=198, Percent_Identity=32.3232323232323, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.9107142857143, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=203, Percent_Identity=34.4827586206897, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788644, Length=179, Percent_Identity=35.195530726257, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1787370, Length=263, Percent_Identity=27.7566539923954, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786703, Length=212, Percent_Identity=31.6037735849057, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=28.310502283105, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=30.3418803418803, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=275, Percent_Identity=26.1818181818182, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=276, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787712, Length=249, Percent_Identity=30.9236947791165, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=239, Percent_Identity=31.3807531380753, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788165, Length=229, Percent_Identity=28.82096069869, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786803, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=25.6637168141593, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788450, Length=198, Percent_Identity=29.7979797979798, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=28.8557213930348, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=29.2887029288703, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1790162, Length=223, Percent_Identity=26.0089686098655, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=29.646017699115, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=28.3720930232558, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1790190, Length=238, Percent_Identity=28.1512605042017, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI87081782, Length=219, Percent_Identity=28.310502283105, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=30.6122448979592, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787972, Length=245, Percent_Identity=30.6122448979592, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193209708, Length=249, Percent_Identity=30.5220883534137, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193202349, Length=249, Percent_Identity=28.9156626506024, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25146777, Length=250, Percent_Identity=26.4, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17541710, Length=245, Percent_Identity=26.530612244898, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=233, Percent_Identity=29.6137339055794, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=254, Percent_Identity=29.5275590551181, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI23397593, Length=248, Percent_Identity=27.0161290322581, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24641565, Length=219, Percent_Identity=29.2237442922374, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30449; Mature: 30318
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLLTVEDLRVRFPTRTGVVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPPH CCCCCCHHHHHEECCCHHHHHHHHHCCHHEECHHHHEEEECCCCCCCCCCCEEEECCCCC AEVTAKRLAFEGIDLLSASPKRRRDLRGKRIAMILQDPKYSLNPVMSIGRQIVETLKRHE HHHHHHHHHHHCCHHHCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KIGRAEARERALEMLAAVQIRDASRVFDLYPHEVSGGMGQRAMIAMMLVAGPELLIADEP HHCHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCC TSALDVTVQLEVLSILDRLVAERGMGLIFVSHDLRLVSSFCDRVLVMYAGKIVEEIAASE CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGKAKHPYTQGLLNCMPVIGADRHPLPVLDRKPEWAL HCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SPLLTVEDLRVRFPTRTGVVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPPH CCCCCHHHHHEECCCHHHHHHHHHCCHHEECHHHHEEEECCCCCCCCCCCEEEECCCCC AEVTAKRLAFEGIDLLSASPKRRRDLRGKRIAMILQDPKYSLNPVMSIGRQIVETLKRHE HHHHHHHHHHHCCHHHCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KIGRAEARERALEMLAAVQIRDASRVFDLYPHEVSGGMGQRAMIAMMLVAGPELLIADEP HHCHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCC TSALDVTVQLEVLSILDRLVAERGMGLIFVSHDLRLVSSFCDRVLVMYAGKIVEEIAASE CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGKAKHPYTQGLLNCMPVIGADRHPLPVLDRKPEWAL HCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]