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The map label for this gene is 150397485

Identifier: 150397485

GI number: 150397485

Start: 2361831

End: 2362658

Strand: Direct

Name: 150397485

Synonym: Smed_2285

Alternate gene names: NA

Gene position: 2361831-2362658 (Clockwise)

Preceding gene: 150397484

Following gene: 150397490

Centisome position: 62.45

GC content: 62.32

Gene sequence:

>828_bases
TTGCTGCAAACGAAGGGGCTAGCGCTGGAAGTGCGGTTGTCTGCCTATATCGACGGCGAACTGGGAGAAAACGAGAGAAC
CGAACTTGACGCTCTTCTGGCGCGCGATGAGGAGGCAAGGACCTTGCTCGACAAACTCAAATCGGGCAGTGCATTCGGAA
GCGGAGCTTTCGAGAACTTCCTCCATGATCCGGTGCCGCTGGCGCTGGTACGGCAGATCAAGCAGGGGCCGGGCATCAAT
CCGAAGACGGAGCGGGTAACGACGGCCAGCCTCCCGCGACGCAGCACGCGCATTTGGCCGCGCATCCTTGCAGCGTCCAC
TGCCCTCTTCCTGCTTGGCGGCGCCGCCGGCTTCATCCTCGGCAGCGCCACGGATCTGGCCGAGCCTACGCACGAAGCCG
ATCAGCGCCCCTGGATGGACGATATCGTCGGATCTCACCGTGTCTATTCGCGCCAGAAGGAGCACCTGGTCGAAGTACCG
GCTGCGCAGTCCGCGGAGATCGAGAGGTGGCTTGCCGCAAGCGTTGGCGTGAACTTCACCGTCCCCGATCTCGACCGCAA
GGGATTGACCTTCGAAGGTGCGAGGCTGCTCGTTGCGAACGGCAAGCCAGCGGCCCAGCTCGTTTACCGGGATCGCGATG
CGGAAGTTTTCACAATCTCGTTTCTGCAGCAGGGCGACGGACAGCAACCCGACGCGTTCATCGAAACCATTCGCGGCGAT
CTCGGCCTGGTCTCTTGGCATCGGGAAGGCGCCTCATTCGCGATGATCGGACCGTCATCCGATCCCGCTCTGCACGACCT
TGCCGAAACGGCGGCGGCTGCTATCTGA

Upstream 100 bases:

>100_bases
CCTCGGCATTCCGGTCGGCACCGTCATGAGCAGATTGTCGACGGCGCGGCTGAGGCTTGCAGCCATGTTATCCGAGAGTA
CCGAAAGGAGGGCCTGACCG

Downstream 100 bases:

>100_bases
GGTTTGTTGTGGCTTCGCGGCCACCCTTCCCGCCACCTCCTGCCCGAGGTGTGCTGACTAACCCAGGTCGGTTTGCGAGA
AATCATTCCCCTTATAGATC

Product: putative transmembrane anti-sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MLQTKGLALEVRLSAYIDGELGENERTELDALLARDEEARTLLDKLKSGSAFGSGAFENFLHDPVPLALVRQIKQGPGIN
PKTERVTTASLPRRSTRIWPRILAASTALFLLGGAAGFILGSATDLAEPTHEADQRPWMDDIVGSHRVYSRQKEHLVEVP
AAQSAEIERWLAASVGVNFTVPDLDRKGLTFEGARLLVANGKPAAQLVYRDRDAEVFTISFLQQGDGQQPDAFIETIRGD
LGLVSWHREGASFAMIGPSSDPALHDLAETAAAAI

Sequences:

>Translated_275_residues
MLQTKGLALEVRLSAYIDGELGENERTELDALLARDEEARTLLDKLKSGSAFGSGAFENFLHDPVPLALVRQIKQGPGIN
PKTERVTTASLPRRSTRIWPRILAASTALFLLGGAAGFILGSATDLAEPTHEADQRPWMDDIVGSHRVYSRQKEHLVEVP
AAQSAEIERWLAASVGVNFTVPDLDRKGLTFEGARLLVANGKPAAQLVYRDRDAEVFTISFLQQGDGQQPDAFIETIRGD
LGLVSWHREGASFAMIGPSSDPALHDLAETAAAAI
>Mature_275_residues
MLQTKGLALEVRLSAYIDGELGENERTELDALLARDEEARTLLDKLKSGSAFGSGAFENFLHDPVPLALVRQIKQGPGIN
PKTERVTTASLPRRSTRIWPRILAASTALFLLGGAAGFILGSATDLAEPTHEADQRPWMDDIVGSHRVYSRQKEHLVEVP
AAQSAEIERWLAASVGVNFTVPDLDRKGLTFEGARLLVANGKPAAQLVYRDRDAEVFTISFLQQGDGQQPDAFIETIRGD
LGLVSWHREGASFAMIGPSSDPALHDLAETAAAAI

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29791; Mature: 29791

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTKGLALEVRLSAYIDGELGENERTELDALLARDEEARTLLDKLKSGSAFGSGAFENF
CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHH
LHDPVPLALVRQIKQGPGINPKTERVTTASLPRRSTRIWPRILAASTALFLLGGAAGFIL
CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHC
GSATDLAEPTHEADQRPWMDDIVGSHRVYSRQKEHLVEVPAAQSAEIERWLAASVGVNFT
CCCHHHCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCEEE
VPDLDRKGLTFEGARLLVANGKPAAQLVYRDRDAEVFTISFLQQGDGQQPDAFIETIRGD
CCCCCCCCCEECCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCC
LGLVSWHREGASFAMIGPSSDPALHDLAETAAAAI
CCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLQTKGLALEVRLSAYIDGELGENERTELDALLARDEEARTLLDKLKSGSAFGSGAFENF
CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHH
LHDPVPLALVRQIKQGPGINPKTERVTTASLPRRSTRIWPRILAASTALFLLGGAAGFIL
CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHC
GSATDLAEPTHEADQRPWMDDIVGSHRVYSRQKEHLVEVPAAQSAEIERWLAASVGVNFT
CCCHHHCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCEEE
VPDLDRKGLTFEGARLLVANGKPAAQLVYRDRDAEVFTISFLQQGDGQQPDAFIETIRGD
CCCCCCCCCEECCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCC
LGLVSWHREGASFAMIGPSSDPALHDLAETAAAAI
CCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA