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The map label for this gene is rpoE [H]

Identifier: 150397484

GI number: 150397484

Start: 2361258

End: 2361827

Strand: Direct

Name: rpoE [H]

Synonym: Smed_2284

Alternate gene names: 150397484

Gene position: 2361258-2361827 (Clockwise)

Preceding gene: 150397483

Following gene: 150397485

Centisome position: 62.44

GC content: 59.65

Gene sequence:

>570_bases
ATGCGTCCGGATCGCGAATGGACGCGCGATCCGGCACGTCTCACTGGAAGAGCAATGCGCCCAGCGGCAGAAATGAAGGA
CTTCAGACGGGATTTGGTCAGCCTGCTGCCCAAATTGCGTCGCTTCGCCATGACGCTGACCCGCAACGCCAGTGACGCCG
ACGACCTCGTCCAGGAGGCTTGCGAACGCGCCATTGCACGCAGCCATCTCTGGAATGGCGACGGTCGCCTGGAAAGCTGG
GTCTATGCGATGACGCGCAACCTGTGGGTGGATGAAATCCGCAAGCGCAAGGTGCGCAGCGGCAGTGCGGCCGCTGTTTT
CGAACTGGACCAACTGAACGTCGAAGCGACAGCCGAGAAGGCTGTCTATGTCAATCAGGTGCAGAAGATGATCCTCTCTA
TGCCTGAGGGATTGGCGAGCGTTTTCCTCCTCGTCAATGTCGAAGGCCATAGTTACCGGGAAACGGCAGAGATCCTCGGC
ATTCCGGTCGGCACCGTCATGAGCAGATTGTCGACGGCGCGGCTGAGGCTTGCAGCCATGTTATCCGAGAGTACCGAAAG
GAGGGCCTGA

Upstream 100 bases:

>100_bases
ACGCGGCCCTGTGGGAAAATCGCGGACGTAACGCAAAAACCGCTTTCCGTTCCGGCTCTTCCCTTGCAGACTTAGGACCA
AATGTTCCATATCATGAGGG

Downstream 100 bases:

>100_bases
CCGTTGCTGCAAACGAAGGGGCTAGCGCTGGAAGTGCGGTTGTCTGCCTATATCGACGGCGAACTGGGAGAAAACGAGAG
AACCGAACTTGACGCTCTTC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRPDREWTRDPARLTGRAMRPAAEMKDFRRDLVSLLPKLRRFAMTLTRNASDADDLVQEACERAIARSHLWNGDGRLESW
VYAMTRNLWVDEIRKRKVRSGSAAAVFELDQLNVEATAEKAVYVNQVQKMILSMPEGLASVFLLVNVEGHSYRETAEILG
IPVGTVMSRLSTARLRLAAMLSESTERRA

Sequences:

>Translated_189_residues
MRPDREWTRDPARLTGRAMRPAAEMKDFRRDLVSLLPKLRRFAMTLTRNASDADDLVQEACERAIARSHLWNGDGRLESW
VYAMTRNLWVDEIRKRKVRSGSAAAVFELDQLNVEATAEKAVYVNQVQKMILSMPEGLASVFLLVNVEGHSYRETAEILG
IPVGTVMSRLSTARLRLAAMLSESTERRA
>Mature_189_residues
MRPDREWTRDPARLTGRAMRPAAEMKDFRRDLVSLLPKLRRFAMTLTRNASDADDLVQEACERAIARSHLWNGDGRLESW
VYAMTRNLWVDEIRKRKVRSGSAAAVFELDQLNVEATAEKAVYVNQVQKMILSMPEGLASVFLLVNVEGHSYRETAEILG
IPVGTVMSRLSTARLRLAAMLSESTERRA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21448; Mature: 21448

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPDREWTRDPARLTGRAMRPAAEMKDFRRDLVSLLPKLRRFAMTLTRNASDADDLVQEA
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
CERAIARSHLWNGDGRLESWVYAMTRNLWVDEIRKRKVRSGSAAAVFELDQLNVEATAEK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHH
AVYVNQVQKMILSMPEGLASVFLLVNVEGHSYRETAEILGIPVGTVMSRLSTARLRLAAM
HHHHHHHHHHHHHCCHHHHHEEHEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LSESTERRA
HHHHHHCCC
>Mature Secondary Structure
MRPDREWTRDPARLTGRAMRPAAEMKDFRRDLVSLLPKLRRFAMTLTRNASDADDLVQEA
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
CERAIARSHLWNGDGRLESWVYAMTRNLWVDEIRKRKVRSGSAAAVFELDQLNVEATAEK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHH
AVYVNQVQKMILSMPEGLASVFLLVNVEGHSYRETAEILGIPVGTVMSRLSTARLRLAAM
HHHHHHHHHHHHHCCHHHHHEEHEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LSESTERRA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]