BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is ykvO [H]

Identifier: 150397431

GI number: 150397431

Start: 2311887

End: 2312648

Strand: Direct

Name: ykvO [H]

Synonym: Smed_2231

Alternate gene names: 150397431

Gene position: 2311887-2312648 (Clockwise)

Preceding gene: 150397429

Following gene: 150397432

Centisome position: 61.13

GC content: 64.96

Gene sequence:

>762_bases
ATGGGCAATTACCAGGGAAAGAAGGCAATCATTGTAGGCGGCACGCATGGCATGGGCCTCGCGACGGTCCGCCGCCTCGT
GGAAGGGGGTGCCGAGGTACTGCTGACCGGGCGCAGCGAGAGCAATATCGCCCGCATCAGGGAAGAGTTTGGTCCGCGCG
TGCATGCGCTATCCTCCGACATAGCCCACCTCAACGACATCGCCATTCTCGGTGCCGCCGCCGGTCAGAAGTTGGGAGCG
ATCGATCTCCTGCATATCAATGCCGGCATTTCCGAGCTGGAGCCGTTCGATCAGGTGAGCGAGGCCTCCTATGACCGCCA
GTTCTCGGTCAACACCAAGGGCGCCTTTTTCACCGTGCAGCGGCTGGCGCCGCTGATCCGCGAAGGCGGCTCTATCGTCT
TCACCTCCTCCGTTGCCGACGAAGGCGGGCATCAGGGCATGAGCGTCTATAGCGCGAGCAAGGCGGCACTCGTCTCCTTC
GCTTCCGTGCTCGCGGCAGAACTGCTGCCGCGTGGTATCCGCGTCAACAGCGTCAGCCCGGGCTTCATCGACACCCCGAC
CAAAGGTGCTGCGGGCCTAACCGAAGCCCAACGGGCCGAGTTCAAGGCCCTCGGCGACGCCATCACGCCGATGAGGCGCA
ACGGCACCGCCGATGAAGTGGCGCGCGCCGTCCTCTTCCTTGCCTTCGAGGCCACCTTCACCACCGGCGCGAAGCTCGCC
GTCGACGGCGGCCTCGGCCAGAAGCTCTCGACCGCCGCCTGA

Upstream 100 bases:

>100_bases
CCACAAATATGGACAATAGGTCCACAGACGCCCATCTAGCACAAATTCGTCCACAAGTGCATCTGTTCATCACCATTGTT
GAACAGAAAGGGAATCGAAC

Downstream 100 bases:

>100_bases
ACGACCTTCTTTGGAAAGGAACTTCCATGAGCAGCATTTCAATTCTCGGCCTGGGCGCCATGGGGACGGCGCTCGCACAA
ACGCTTCTTAAGAACGGTCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MGNYQGKKAIIVGGTHGMGLATVRRLVEGGAEVLLTGRSESNIARIREEFGPRVHALSSDIAHLNDIAILGAAAGQKLGA
IDLLHINAGISELEPFDQVSEASYDRQFSVNTKGAFFTVQRLAPLIREGGSIVFTSSVADEGGHQGMSVYSASKAALVSF
ASVLAAELLPRGIRVNSVSPGFIDTPTKGAAGLTEAQRAEFKALGDAITPMRRNGTADEVARAVLFLAFEATFTTGAKLA
VDGGLGQKLSTAA

Sequences:

>Translated_253_residues
MGNYQGKKAIIVGGTHGMGLATVRRLVEGGAEVLLTGRSESNIARIREEFGPRVHALSSDIAHLNDIAILGAAAGQKLGA
IDLLHINAGISELEPFDQVSEASYDRQFSVNTKGAFFTVQRLAPLIREGGSIVFTSSVADEGGHQGMSVYSASKAALVSF
ASVLAAELLPRGIRVNSVSPGFIDTPTKGAAGLTEAQRAEFKALGDAITPMRRNGTADEVARAVLFLAFEATFTTGAKLA
VDGGLGQKLSTAA
>Mature_252_residues
GNYQGKKAIIVGGTHGMGLATVRRLVEGGAEVLLTGRSESNIARIREEFGPRVHALSSDIAHLNDIAILGAAAGQKLGAI
DLLHINAGISELEPFDQVSEASYDRQFSVNTKGAFFTVQRLAPLIREGGSIVFTSSVADEGGHQGMSVYSASKAALVSFA
SVLAAELLPRGIRVNSVSPGFIDTPTKGAAGLTEAQRAEFKALGDAITPMRRNGTADEVARAVLFLAFEATFTTGAKLAV
DGGLGQKLSTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=30.8300395256917, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=32.3770491803279, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.4526748971193, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=32.6086956521739, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=32.3651452282158, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI126723191, Length=202, Percent_Identity=30.1980198019802, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI15277342, Length=165, Percent_Identity=38.7878787878788, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=30.8370044052863, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=27.8884462151394, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=28.4584980237154, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4503817, Length=205, Percent_Identity=26.8292682926829, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=28.6274509803922, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=29.2, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=35.2, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.0708661417323, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=32.520325203252, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.4285714285714, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=28.4, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=32.0158102766798, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=28.3400809716599, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=31.2, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=29.3877551020408, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=30.2788844621514, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787820, Length=225, Percent_Identity=25.3333333333333, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=31.0526315789474, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788891, Length=213, Percent_Identity=29.1079812206573, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=34.2629482071713, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=31.2741312741313, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=30, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=32.8063241106719, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.9391634980989, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=31.2741312741313, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=29.9595141700405, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.5343511450382, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=30.4, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=27.3092369477912, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.4339622641509, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.4182509505703, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.0754716981132, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=28.6259541984733, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.9242424242424, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=29.1187739463602, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=27.7566539923954, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=30.7984790874525, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=29.2592592592593, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.5660377358491, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=28.3524904214559, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=28.8659793814433, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=27.6752767527675, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=28.4090909090909, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=30.2325581395349, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=28.4615384615385, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=26.4550264550265, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=28.968253968254, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=28.4210526315789, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=223, Percent_Identity=30.4932735426009, Blast_Score=79, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6322226, Length=216, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=24.901185770751, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=236, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=33.0739299610895, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=33.6, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.8548387096774, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=32.7800829875519, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI23397609, Length=241, Percent_Identity=32.7800829875519, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=31.3492063492063, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24644337, Length=221, Percent_Identity=31.6742081447964, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17737361, Length=251, Percent_Identity=30.2788844621514, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=23.7704918032787, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28571387, Length=242, Percent_Identity=26.4462809917355, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26282; Mature: 26151

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNYQGKKAIIVGGTHGMGLATVRRLVEGGAEVLLTGRSESNIARIREEFGPRVHALSSD
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHH
IAHLNDIAILGAAAGQKLGAIDLLHINAGISELEPFDQVSEASYDRQFSVNTKGAFFTVQ
HHHHHHHHEEECCCCCCCCCEEEEEECCCHHHCCCHHHHHHCCCCCEEECCCCCCEEEHH
RLAPLIREGGSIVFTSSVADEGGHQGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSP
HHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
GFIDTPTKGAAGLTEAQRAEFKALGDAITPMRRNGTADEVARAVLFLAFEATFTTGAKLA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
VDGGLGQKLSTAA
EECCCCCCCCCCC
>Mature Secondary Structure 
GNYQGKKAIIVGGTHGMGLATVRRLVEGGAEVLLTGRSESNIARIREEFGPRVHALSSD
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHH
IAHLNDIAILGAAAGQKLGAIDLLHINAGISELEPFDQVSEASYDRQFSVNTKGAFFTVQ
HHHHHHHHEEECCCCCCCCCEEEEEECCCHHHCCCHHHHHHCCCCCEEECCCCCCEEEHH
RLAPLIREGGSIVFTSSVADEGGHQGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSP
HHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
GFIDTPTKGAAGLTEAQRAEFKALGDAITPMRRNGTADEVARAVLFLAFEATFTTGAKLA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
VDGGLGQKLSTAA
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]