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The map label for this gene is ydcU [H]

Identifier: 150397390

GI number: 150397390

Start: 2265194

End: 2266144

Strand: Direct

Name: ydcU [H]

Synonym: Smed_2189

Alternate gene names: 150397390

Gene position: 2265194-2266144 (Clockwise)

Preceding gene: 150397389

Following gene: 150397391

Centisome position: 59.9

GC content: 60.25

Gene sequence:

>951_bases
ATGACGATCGTCGCCGAGAGCATCATTCTTCCCCAACGCCGCAGCACGGCGGGCCGGCTTTCGGATTTCCTCTGGCGGCA
CCCTCATGTGCTTCTGGCGATTTTCCTCGGGCCGCCGCTGCTGTGGCTCGGGATTGTCTATCTCGGTTCGCTCTTTGCGC
TGCTCCTGCAAAGCTTCTTCTCGATCGACGACTTCTCCGGTCTCGTAAACTACGAATTCACGCTTGCCACCTACCGGCAG
CTTTTGAGCGGAGCCAACCTCGACATCATCATCCGTACCGTCACCATGGCCGCGGTGGTGACCCTCGTTTCGGCGCTCGT
CGCCTTTCCAATCGCCTATTATGCGGCCCGTTATGCGCGCGGGAAATGGAAGGCGCTCTTCTATCTCGCCGTTATGCTGC
CGCTCTGGTCGAGCTATCTCGTCAAGATTTATGCCTGGAAGCTGATCCTGGCCAAGGAAGGCATCCTCACCTGGATCTTC
CAGAAGCTGAACCTCCTCTGGTTGATCGATGCCTGGCTTTCTCTTCCGCTCGTCGGCGGCAACTCGCTGTCGGTCAGCTA
TACGGGCACCTTCATCGTCTTCGTCTACGTCTGGATGCCGTTCATGATCCTGCCGATCCAGGCCGCGCTCGAGCGGGTAC
CGGCGAGCCTGATCGAAGCCTCGTCGGATCTCGGCGGCACCCCGTCCCAGACATTTCGCCATGTGCTCTTTCCGCTGGCG
CTGCCGGGCATAGTCGCGGGTTCGATTTTCACATTCTCACTGACGCTCGGCGATTACATCATTCCGCAGATCGTCGGCTC
GTCGCGGCTCTTCATCGGCCAGGCCGTCTACGCGCAGCAGGGGACCGCCGGCAATATTCCGCTCGCTGCCGCCTTCACGG
TCGTGCCGATCGTCATCATGGGCGCCTATCTCTGGATGGCAAGACGCATGGGGGCTTTCGATGCGCTCTGA

Upstream 100 bases:

>100_bases
GGATTGCGGTGGCCAGCCCGGCGGCGCGCGGCGTTCCGGCGGTCGGCAGCCCGGTTACGATCAGCTTCGCGGCGCACGAT
CTCCATCCGATGGAGGACGC

Downstream 100 bases:

>100_bases
AAAATCGAACCCCGCCCCTCTTGGACTGAAGCTCGCCGCCGGCGCCGGCCTCGCCTTCATGCATCTGCCGATTCTGCTGA
TCTTTCTTTATGCCTTCACG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTIVAESIILPQRRSTAGRLSDFLWRHPHVLLAIFLGPPLLWLGIVYLGSLFALLLQSFFSIDDFSGLVNYEFTLATYRQ
LLSGANLDIIIRTVTMAAVVTLVSALVAFPIAYYAARYARGKWKALFYLAVMLPLWSSYLVKIYAWKLILAKEGILTWIF
QKLNLLWLIDAWLSLPLVGGNSLSVSYTGTFIVFVYVWMPFMILPIQAALERVPASLIEASSDLGGTPSQTFRHVLFPLA
LPGIVAGSIFTFSLTLGDYIIPQIVGSSRLFIGQAVYAQQGTAGNIPLAAAFTVVPIVIMGAYLWMARRMGAFDAL

Sequences:

>Translated_316_residues
MTIVAESIILPQRRSTAGRLSDFLWRHPHVLLAIFLGPPLLWLGIVYLGSLFALLLQSFFSIDDFSGLVNYEFTLATYRQ
LLSGANLDIIIRTVTMAAVVTLVSALVAFPIAYYAARYARGKWKALFYLAVMLPLWSSYLVKIYAWKLILAKEGILTWIF
QKLNLLWLIDAWLSLPLVGGNSLSVSYTGTFIVFVYVWMPFMILPIQAALERVPASLIEASSDLGGTPSQTFRHVLFPLA
LPGIVAGSIFTFSLTLGDYIIPQIVGSSRLFIGQAVYAQQGTAGNIPLAAAFTVVPIVIMGAYLWMARRMGAFDAL
>Mature_315_residues
TIVAESIILPQRRSTAGRLSDFLWRHPHVLLAIFLGPPLLWLGIVYLGSLFALLLQSFFSIDDFSGLVNYEFTLATYRQL
LSGANLDIIIRTVTMAAVVTLVSALVAFPIAYYAARYARGKWKALFYLAVMLPLWSSYLVKIYAWKLILAKEGILTWIFQ
KLNLLWLIDAWLSLPLVGGNSLSVSYTGTFIVFVYVWMPFMILPIQAALERVPASLIEASSDLGGTPSQTFRHVLFPLAL
PGIVAGSIFTFSLTLGDYIIPQIVGSSRLFIGQAVYAQQGTAGNIPLAAAFTVVPIVIMGAYLWMARRMGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=313, Percent_Identity=57.1884984025559, Blast_Score=351, Evalue=3e-98,
Organism=Escherichia coli, GI1787369, Length=262, Percent_Identity=28.2442748091603, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787080, Length=236, Percent_Identity=31.3559322033898, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34910; Mature: 34779

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVAESIILPQRRSTAGRLSDFLWRHPHVLLAIFLGPPLLWLGIVYLGSLFALLLQSFF
CCEEECHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
SIDDFSGLVNYEFTLATYRQLLSGANLDIIIRTVTMAAVVTLVSALVAFPIAYYAARYAR
CCCCCCCHHEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKWKALFYLAVMLPLWSSYLVKIYAWKLILAKEGILTWIFQKLNLLWLIDAWLSLPLVGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECC
NSLSVSYTGTFIVFVYVWMPFMILPIQAALERVPASLIEASSDLGGTPSQTFRHVLFPLA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LPGIVAGSIFTFSLTLGDYIIPQIVGSSRLFIGQAVYAQQGTAGNIPLAAAFTVVPIVIM
HHHHHHHHHHEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
GAYLWMARRMGAFDAL
HHHHHHHHHHCHHCCC
>Mature Secondary Structure 
TIVAESIILPQRRSTAGRLSDFLWRHPHVLLAIFLGPPLLWLGIVYLGSLFALLLQSFF
CEEECHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
SIDDFSGLVNYEFTLATYRQLLSGANLDIIIRTVTMAAVVTLVSALVAFPIAYYAARYAR
CCCCCCCHHEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKWKALFYLAVMLPLWSSYLVKIYAWKLILAKEGILTWIFQKLNLLWLIDAWLSLPLVGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECC
NSLSVSYTGTFIVFVYVWMPFMILPIQAALERVPASLIEASSDLGGTPSQTFRHVLFPLA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LPGIVAGSIFTFSLTLGDYIIPQIVGSSRLFIGQAVYAQQGTAGNIPLAAAFTVVPIVIM
HHHHHHHHHHEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
GAYLWMARRMGAFDAL
HHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]