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The map label for this gene is ydcV [H]

Identifier: 150397391

GI number: 150397391

Start: 2266134

End: 2266949

Strand: Direct

Name: ydcV [H]

Synonym: Smed_2190

Alternate gene names: 150397391

Gene position: 2266134-2266949 (Clockwise)

Preceding gene: 150397390

Following gene: 150397392

Centisome position: 59.92

GC content: 64.22

Gene sequence:

>816_bases
ATGCGCTCTGAAAAATCGAACCCCGCCCCTCTTGGACTGAAGCTCGCCGCCGGCGCCGGCCTCGCCTTCATGCATCTGCC
GATTCTGCTGATCTTTCTTTATGCCTTCACGACGGAGGAGAAGAGCTACCAGTTTCCGCCGCCGGGGCTTACCACTCAGT
GGTTCGCCGTCGCCTGGAGCCGCCCGGACGTCTGGGCCGCGCTGACGCTGTCCGTCAAGGTCGCCTCGATCGCAACGGCG
GTCGCGCTCGTGCTGGGGACGCTCTGCGCCGCCGCCGTCAGCCAGACCCGCTTCTTCGGCCGCGAGACGATCTCGCTTCT
CGTCATCCTGCCGATCGCGCTTCCCGGCATCATCACCGGCATCGCGCTGCGCTCGGCCTTTTCGATGGCCGATATCCCCT
TCTCCTTCTGGACCATCGTGCTCGGCCACGCCACCTTCTGCATCGTCGTCGTCTACAACAATGCCGTCGCCCGTTTCCGC
CGTATTTCGGGCTCGCTGATCGAGGCCTCGATGGACCTCGGCGCCGATGGTTTTCAGACCTTCCGCTACATCATCCTCCC
GAACATCGGAACGGCGCTGCTTGCCGGCGGCATGCTCGCCTTCGCGCTTTCCTTCGACGAGGTGATCGTCACCACCTTCA
CTGCCGGACAGCAATCGACCCTGCCGATCTGGATGCTCGAAGAACTGATCCGTCCGCGCCAGCGCCCGGTGACCAACGTC
GTCGCCATGGTCGTCGTGATGGTCACCTTCCTGCCGATCCTCGGCGCCTATTACCTGACCCGCGACGGCGATCAGATCGC
CGGCGCCGGCAAATGA

Upstream 100 bases:

>100_bases
GGGACCGCCGGCAATATTCCGCTCGCTGCCGCCTTCACGGTCGTGCCGATCGTCATCATGGGCGCCTATCTCTGGATGGC
AAGACGCATGGGGGCTTTCG

Downstream 100 bases:

>100_bases
CATTCGCACTTGAAGGGAGAACAGACATGGACACTCAGCTCTTGATCGGATCCCGCTTCGAATCCGGAACGGAGGCCGAG
GAGCACATCCTCAATCCGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRSEKSNPAPLGLKLAAGAGLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWSRPDVWAALTLSVKVASIATA
VALVLGTLCAAAVSQTRFFGRETISLLVILPIALPGIITGIALRSAFSMADIPFSFWTIVLGHATFCIVVVYNNAVARFR
RISGSLIEASMDLGADGFQTFRYIILPNIGTALLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNV
VAMVVVMVTFLPILGAYYLTRDGDQIAGAGK

Sequences:

>Translated_271_residues
MRSEKSNPAPLGLKLAAGAGLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWSRPDVWAALTLSVKVASIATA
VALVLGTLCAAAVSQTRFFGRETISLLVILPIALPGIITGIALRSAFSMADIPFSFWTIVLGHATFCIVVVYNNAVARFR
RISGSLIEASMDLGADGFQTFRYIILPNIGTALLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNV
VAMVVVMVTFLPILGAYYLTRDGDQIAGAGK
>Mature_271_residues
MRSEKSNPAPLGLKLAAGAGLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWSRPDVWAALTLSVKVASIATA
VALVLGTLCAAAVSQTRFFGRETISLLVILPIALPGIITGIALRSAFSMADIPFSFWTIVLGHATFCIVVVYNNAVARFR
RISGSLIEASMDLGADGFQTFRYIILPNIGTALLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNV
VAMVVVMVTFLPILGAYYLTRDGDQIAGAGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=265, Percent_Identity=63.3962264150943, Blast_Score=295, Evalue=2e-81,
Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=27.1889400921659, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787081, Length=254, Percent_Identity=28.3464566929134, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787080, Length=208, Percent_Identity=27.8846153846154, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29220; Mature: 29220

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEKSNPAPLGLKLAAGAGLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWS
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC
RPDVWAALTLSVKVASIATAVALVLGTLCAAAVSQTRFFGRETISLLVILPIALPGIITG
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALRSAFSMADIPFSFWTIVLGHATFCIVVVYNNAVARFRRISGSLIEASMDLGADGFQT
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEECHHHHHHHHHCCHHHHHHHHCCCCHHHH
FRYIILPNIGTALLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNV
EEEEEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHH
VAMVVVMVTFLPILGAYYLTRDGDQIAGAGK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRSEKSNPAPLGLKLAAGAGLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWS
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC
RPDVWAALTLSVKVASIATAVALVLGTLCAAAVSQTRFFGRETISLLVILPIALPGIITG
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALRSAFSMADIPFSFWTIVLGHATFCIVVVYNNAVARFRRISGSLIEASMDLGADGFQT
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEECHHHHHHHHHCCHHHHHHHHCCCCHHHH
FRYIILPNIGTALLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNV
EEEEEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHH
VAMVVVMVTFLPILGAYYLTRDGDQIAGAGK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]