| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is est [H]
Identifier: 150397386
GI number: 150397386
Start: 2260768
End: 2261706
Strand: Reverse
Name: est [H]
Synonym: Smed_2185
Alternate gene names: 150397386
Gene position: 2261706-2260768 (Counterclockwise)
Preceding gene: 150397397
Following gene: 150397383
Centisome position: 59.8
GC content: 66.13
Gene sequence:
>939_bases ATGGGATCAGGACCGACAAGACCAATGCCGACGGAAGCCGGCATTCTGGCCTTTCACGAACGCTGCGAAGCGTTCTACCC CGCCGATGCGGTCAACGCCTCCGTCGCGCAGCAGCGCCGATGGTATGACGCACTCTGCGCCGAGTTCGATGCGCCATCGC CGGAGGGATTGACGCGGCGTGACGACCTCGTGGCTGGTCGAATCGCCATCAGGCGCTATCGTCCGGCCGAAGTCGCGAGT GAGACGCGTGTTTTCTACATACACGGCGGCGGCTTCGTCGTCGGCTCACTTGAGAGCCATGATGCGATCTGCGCCGAGCT TGCCGATGGCGCGCGGGTCGAACTGGTGTCGGCGGACTATCGCCTCGCGCCCGAGCACGTATGGCCCGCAGCCTTCGAGG ACTGCTATGACGTGATGGAAGCGCTGCTTGCCGATGGGCGTCCGCTCGTCGTCGCGGGCGACAGCGCCGGCGGCAACCTC TGCGCTGGGATCGTGCTGAAGGCAAAAGCCGAAGGGCTCTCCGGCATCGCCGGGCAGGTCCTGATCTATCCCGGCCTCGG CGGCGATCTGACGCGCGGCTCCTATTTGGAGATGGCCGAGGCGCCGCTGCTTTCCACCGCCGATGTGGACTATTACCGCG ATGTGCTGAAAGCACCGGCGGATGAGCCCTTTGCGCACCCGTTGCGCGCCGCGAACCTGTCAGGGCTTCCCCCGGCCTAT GTTTCCGGCGCCCATTTTGACCCCTTGCGTGATGATGCGCGCGCCTATGCCGCCCGGCTTGCCAAGGCGGGCGTCGACGT CACCTATCGCGAGGAGCCGCAGATGGTCCATTCCTGGCTCCGGGCTCGCCACATGAGTCCCGGTGCGCGGGAAGGCTTCG GCCAGCTGGTGCGGGGTGTTGCGGGACTTGCCGGCACTTGCCCCTCTCCTCGGGTCTAA
Upstream 100 bases:
>100_bases CGAAATCAAGCAGACAAAGGTCGCCGGCAGCACTTTGAAACCTTGTACATTTGCCCTTAAATCGGCTTGATCATGGAAGC ATGCAGCGGGGAGTGCGGGG
Downstream 100 bases:
>100_bases GCCGAGGACTAACCCCCGCAGCCGGATGAGGGGCTTTCCCGCTCCGGTCGTTCACATGAAATCGCGCCGGATCCGCTTCT CGAAGCTCTTCTCAAAGATC
Product: alpha/beta hydrolase domain-containing protein
Products: alcohol; a carboxylate [C]
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MGSGPTRPMPTEAGILAFHERCEAFYPADAVNASVAQQRRWYDALCAEFDAPSPEGLTRRDDLVAGRIAIRRYRPAEVAS ETRVFYIHGGGFVVGSLESHDAICAELADGARVELVSADYRLAPEHVWPAAFEDCYDVMEALLADGRPLVVAGDSAGGNL CAGIVLKAKAEGLSGIAGQVLIYPGLGGDLTRGSYLEMAEAPLLSTADVDYYRDVLKAPADEPFAHPLRAANLSGLPPAY VSGAHFDPLRDDARAYAARLAKAGVDVTYREEPQMVHSWLRARHMSPGAREGFGQLVRGVAGLAGTCPSPRV
Sequences:
>Translated_312_residues MGSGPTRPMPTEAGILAFHERCEAFYPADAVNASVAQQRRWYDALCAEFDAPSPEGLTRRDDLVAGRIAIRRYRPAEVAS ETRVFYIHGGGFVVGSLESHDAICAELADGARVELVSADYRLAPEHVWPAAFEDCYDVMEALLADGRPLVVAGDSAGGNL CAGIVLKAKAEGLSGIAGQVLIYPGLGGDLTRGSYLEMAEAPLLSTADVDYYRDVLKAPADEPFAHPLRAANLSGLPPAY VSGAHFDPLRDDARAYAARLAKAGVDVTYREEPQMVHSWLRARHMSPGAREGFGQLVRGVAGLAGTCPSPRV >Mature_311_residues GSGPTRPMPTEAGILAFHERCEAFYPADAVNASVAQQRRWYDALCAEFDAPSPEGLTRRDDLVAGRIAIRRYRPAEVASE TRVFYIHGGGFVVGSLESHDAICAELADGARVELVSADYRLAPEHVWPAAFEDCYDVMEALLADGRPLVVAGDSAGGNLC AGIVLKAKAEGLSGIAGQVLIYPGLGGDLTRGSYLEMAEAPLLSTADVDYYRDVLKAPADEPFAHPLRAANLSGLPPAYV SGAHFDPLRDDARAYAARLAKAGVDVTYREEPQMVHSWLRARHMSPGAREGFGQLVRGVAGLAGTCPSPRV
Specific function: Has An Esterase Activity. Triacetyl Glycerol (Triacetin) Is A Substrate Of The Enzyme. [C]
COG id: COG0657
COG function: function code I; Esterase/lipase
Gene ontology:
Cell location: Secreted (Potential). Note=External to the cytoplasmic membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'GDXG' lipolytic enzyme family [H]
Homologues:
Organism=Homo sapiens, GI68299767, Length=281, Percent_Identity=27.4021352313167, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI206597554, Length=307, Percent_Identity=27.6872964169381, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI61966717, Length=280, Percent_Identity=27.8571428571429, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI68051721, Length=168, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21328446, Length=112, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI157041239, Length=162, Percent_Identity=30.2469135802469, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1786682, Length=278, Percent_Identity=28.4172661870504, Blast_Score=95, Evalue=7e-21, Organism=Caenorhabditis elegans, GI72001146, Length=281, Percent_Identity=29.5373665480427, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71996133, Length=138, Percent_Identity=36.9565217391304, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17567059, Length=139, Percent_Identity=32.3741007194245, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17540028, Length=138, Percent_Identity=34.0579710144928, Blast_Score=82, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013094 - InterPro: IPR002168 [H]
Pfam domain/function: PF07859 Abhydrolase_3 [H]
EC number: 3.1.1.- [C]
Molecular weight: Translated: 33309; Mature: 33178
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS01173 LIPASE_GDXG_HIS ; PS01174 LIPASE_GDXG_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSGPTRPMPTEAGILAFHERCEAFYPADAVNASVAQQRRWYDALCAEFDAPSPEGLTRR CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH DDLVAGRIAIRRYRPAEVASETRVFYIHGGGFVVGSLESHDAICAELADGARVELVSADY HHHHHHHHHHHHCCCHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHCCCCEEEEEECCC RLAPEHVWPAAFEDCYDVMEALLADGRPLVVAGDSAGGNLCAGIVLKAKAEGLSGIAGQV EECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEHEEEEECCCCCCCCCCCE LIYPGLGGDLTRGSYLEMAEAPLLSTADVDYYRDVLKAPADEPFAHPLRAANLSGLPPAY EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHH VSGAHFDPLRDDARAYAARLAKAGVDVTYREEPQMVHSWLRARHMSPGAREGFGQLVRGV HCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGLAGTCPSPRV HHHCCCCCCCCC >Mature Secondary Structure GSGPTRPMPTEAGILAFHERCEAFYPADAVNASVAQQRRWYDALCAEFDAPSPEGLTRR CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH DDLVAGRIAIRRYRPAEVASETRVFYIHGGGFVVGSLESHDAICAELADGARVELVSADY HHHHHHHHHHHHCCCHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHCCCCEEEEEECCC RLAPEHVWPAAFEDCYDVMEALLADGRPLVVAGDSAGGNLCAGIVLKAKAEGLSGIAGQV EECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEHEEEEECCCCCCCCCCCE LIYPGLGGDLTRGSYLEMAEAPLLSTADVDYYRDVLKAPADEPFAHPLRAANLSGLPPAY EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHH VSGAHFDPLRDDARAYAARLAKAGVDVTYREEPQMVHSWLRARHMSPGAREGFGQLVRGV HCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGLAGTCPSPRV HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Carboxylic ester; H2O [C]
Specific reaction: Carboxylic ester + H2O = an alcohol + carboxylate [C]
General reaction: Hydrolase; Acting on ester bonds; Carboxylic ester hydrolases [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2545531 [H]