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The map label for this gene is ycjO [C]

Identifier: 150397364

GI number: 150397364

Start: 2232873

End: 2233796

Strand: Reverse

Name: ycjO [C]

Synonym: Smed_2163

Alternate gene names: 150397364

Gene position: 2233796-2232873 (Counterclockwise)

Preceding gene: 150397365

Following gene: 150397363

Centisome position: 59.07

GC content: 60.61

Gene sequence:

>924_bases
ATGGCTTCAGTAACGCACTCCAGCGCAAGGCGCAGCAGGTTCAGGATCAGCAAAAGGGTTTTACCCTATGTGCTCTCCCT
GCCGGCGCTTCTCGTGTGTATCGGCATCCTGATCCCGTTCTTCACGGCGGTGATCTATTCCTTCCAGCGCTACAGGCTGA
GCCAGCCCTGGGCACGTCAGTTCAACTGGGGTGACAACTACCTGAATTTCTTCACGGATCCGGGCTTCTGGAACACGCTG
AAGATCTCGCTGCTCTATGCCGGCGTCACGGTGACCCTGGAGCTGCTGCTCGGTCTCGGCATTGCGCTGCTCCTGCAGCG
CCGCTCCACGGTCAACAACTTCATCTCGATCATGCTGCTCCTGCCGCTGATGACGGCGCCGGCGCTCGCGGCGCTGATGT
GGAAGCTGATGACCAATCCCGGCTTCGGCATCCTGAGCTACCTCGCAAGTCTCATCGGGCTGGAGAATTTCCGCTGGGCT
TCGTCGCCGGATACGGCGCTCCTGACGGTCGTGCTCGTCGATATCTGGGTCTATACGCCCTTTATTATGATCCTGCTCCT
GGCAGGCCTACGCTCGCTGCCGACGCAGCCTTTCGAGGCGGCGGCGCTCGATGGCGTGCCGCGCAGCTTCGTCTTCTTCC
GCATCACCCTGCCCATGCTGACGCCCTATATCCTGACGGCGACGCTGTTCCGCCTGCTCGATTCGATCCAGCAGTTCGAC
ATCATCTACGCGATGACGCAAGGAGGGCCGGGCGACACCCTTACCGTCTTCCAGGTCGAGGCTTACCTCAACTTCTTCCA
GTCGACCAATGTGGGCCGGTCCGCGGCGCTGCTGATCATCCTCTGGGCGATCACCTACATATTGTCGAACATCTTCATCA
AGAACTGGCTCCGGCTGCGCGAACGCGCCCGCGGCGAAGCGTAA

Upstream 100 bases:

>100_bases
CCGTTTCGGCACGAAAAACAAACGGAAAAGGGGGTCTGGCTGCGCCGGCCGCGGCCGACCCCTTATTGTCATAGACACAG
GCATTTAGACGGAGCTGGCC

Downstream 100 bases:

>100_bases
GGAGGTCGAAAATGGAAACCACGTCTCCGGTCGAAAGGCTCCTGCGCGGCGTAGCGCTTACCCTGGTGGTCGTCTTCTTC
ATGTTCCCGATCGTCTGGAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MASVTHSSARRSRFRISKRVLPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQFNWGDNYLNFFTDPGFWNTL
KISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLLLPLMTAPALAALMWKLMTNPGFGILSYLASLIGLENFRWA
SSPDTALLTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYILSNIFIKNWLRLRERARGEA

Sequences:

>Translated_307_residues
MASVTHSSARRSRFRISKRVLPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQFNWGDNYLNFFTDPGFWNTL
KISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLLLPLMTAPALAALMWKLMTNPGFGILSYLASLIGLENFRWA
SSPDTALLTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYILSNIFIKNWLRLRERARGEA
>Mature_306_residues
ASVTHSSARRSRFRISKRVLPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQFNWGDNYLNFFTDPGFWNTLK
ISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLLLPLMTAPALAALMWKLMTNPGFGILSYLASLIGLENFRWAS
SPDTALLTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFDI
IYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYILSNIFIKNWLRLRERARGEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=27.8884462151394, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789861, Length=295, Percent_Identity=30.8474576271186, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790465, Length=213, Percent_Identity=29.1079812206573, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34693; Mature: 34561

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVTHSSARRSRFRISKRVLPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FNWGDNYLNFFTDPGFWNTLKISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLL
CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLMTAPALAALMWKLMTNPGFGILSYLASLIGLENFRWASSPDTALLTVVLVDIWVYTP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYILSNIFIKNWLRLR
HHEEEECCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERARGEA
HHHCCCC
>Mature Secondary Structure 
ASVTHSSARRSRFRISKRVLPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FNWGDNYLNFFTDPGFWNTLKISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLL
CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLMTAPALAALMWKLMTNPGFGILSYLASLIGLENFRWASSPDTALLTVVLVDIWVYTP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
HHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYILSNIFIKNWLRLR
HHEEEECCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERARGEA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]