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The map label for this gene is ygbI [H]

Identifier: 150397352

GI number: 150397352

Start: 2219889

End: 2220674

Strand: Reverse

Name: ygbI [H]

Synonym: Smed_2151

Alternate gene names: 150397352

Gene position: 2220674-2219889 (Counterclockwise)

Preceding gene: 150397353

Following gene: 150397351

Centisome position: 58.72

GC content: 60.69

Gene sequence:

>786_bases
ATGAAACCGGACGACAGGCGGCAGGCGATCATGGATGTCCTCATGGAAGCGGGAACGGCTTCCGTCGAGGAGCTCAGCTT
CCGCTTTGGCGTCAGCAAGATGACCGTGCATCGGGATCTCGACGATCTCGAGCAGGCAGGGCTCCTGCGAAAGGTTCATG
GCGGTGCTTCCATCCAGTCGAGCCCGCAGTTCGAAAGCGATTTCCGCTATCGCGAGAAGATCGCGACGAGTGAAAAGCGC
CGCCTTGGCGAGTACGCCGCGACCCTGGTCGAGCCGGGCCAGAGCGTCATAATCGACGACAGCTCGACGGCTGGCGCGAT
TGCCGGTTTTCTCAAGGATATTCGCCCGCTCACGGTCATTACCAATAACCTTGGCGTCATCACCGATCTGTCCGGTGTCC
CGGGTATGAACCTGATCGCGCTGGGCGGCCATTACAGCAAGAGGTTCAACGGGTTTTTCGGCGTCGTCACCGAGGAGGCG
CTGCGATCTCTGCGCGCGGACGTGGCGTTCCTGTCAAGTTCGGCGGTCGAGGGAACGGCCGCCTTCCACCAGGACCAGGA
AGTGGTTCAGATCAAGCGTCAGATGGTGAAATCGGCCAACCGCAAATATCTCCTGGTGGACCACGGCAAGTTCGGCCGTT
CGGCCTTGCATTTCCTGATGGGGCTCGAGGCCTTCGACGCGGTTCTGACCGGGAGCGAAGTGTCCGACGGGCACGCAAGG
GAACTGGGAGACGCCGGCGTCGGGCTCCTCAGGATCGACAACCAGAAAATAATGGAGAAGGCATGA

Upstream 100 bases:

>100_bases
TATAAATCGTAACAAAATCGCATGTTTGAGTTGAAATATCACATATAGATGTTATCTTTTCCGAGGGTGGCGAAACGGCC
AGACCGACGGAAATGTTACG

Downstream 100 bases:

>100_bases
GCAAGTCGGGGCTCTGGGTCGGCACGAGCTGGAAGATGAACAAGACGTTGGCGGAGGCCATGGTCTTCGCCGATGGTCTT
GCGGCCGCAGACGCGACGCG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKPDDRRQAIMDVLMEAGTASVEELSFRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQSSPQFESDFRYREKIATSEKR
RLGEYAATLVEPGQSVIIDDSSTAGAIAGFLKDIRPLTVITNNLGVITDLSGVPGMNLIALGGHYSKRFNGFFGVVTEEA
LRSLRADVAFLSSSAVEGTAAFHQDQEVVQIKRQMVKSANRKYLLVDHGKFGRSALHFLMGLEAFDAVLTGSEVSDGHAR
ELGDAGVGLLRIDNQKIMEKA

Sequences:

>Translated_261_residues
MKPDDRRQAIMDVLMEAGTASVEELSFRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQSSPQFESDFRYREKIATSEKR
RLGEYAATLVEPGQSVIIDDSSTAGAIAGFLKDIRPLTVITNNLGVITDLSGVPGMNLIALGGHYSKRFNGFFGVVTEEA
LRSLRADVAFLSSSAVEGTAAFHQDQEVVQIKRQMVKSANRKYLLVDHGKFGRSALHFLMGLEAFDAVLTGSEVSDGHAR
ELGDAGVGLLRIDNQKIMEKA
>Mature_261_residues
MKPDDRRQAIMDVLMEAGTASVEELSFRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQSSPQFESDFRYREKIATSEKR
RLGEYAATLVEPGQSVIIDDSSTAGAIAGFLKDIRPLTVITNNLGVITDLSGVPGMNLIALGGHYSKRFNGFFGVVTEEA
LRSLRADVAFLSSSAVEGTAAFHQDQEVVQIKRQMVKSANRKYLLVDHGKFGRSALHFLMGLEAFDAVLTGSEVSDGHAR
ELGDAGVGLLRIDNQKIMEKA

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=257, Percent_Identity=31.5175097276265, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=28.2868525896414, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=28.4584980237154, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789829, Length=231, Percent_Identity=31.1688311688312, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=28.0172413793103, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=27.4678111587983, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789170, Length=212, Percent_Identity=29.7169811320755, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790635, Length=255, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082344, Length=213, Percent_Identity=28.169014084507, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787063, Length=217, Percent_Identity=27.1889400921659, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=23.3201581027668, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28429; Mature: 28429

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDDRRQAIMDVLMEAGTASVEELSFRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
SPQFESDFRYREKIATSEKRRLGEYAATLVEPGQSVIIDDSSTAGAIAGFLKDIRPLTVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEE
TNNLGVITDLSGVPGMNLIALGGHYSKRFNGFFGVVTEEALRSLRADVAFLSSSAVEGTA
ECCCCEEEECCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AFHQDQEVVQIKRQMVKSANRKYLLVDHGKFGRSALHFLMGLEAFDAVLTGSEVSDGHAR
HHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
ELGDAGVGLLRIDNQKIMEKA
HHHCCCEEEEEECCHHHHHCC
>Mature Secondary Structure
MKPDDRRQAIMDVLMEAGTASVEELSFRFGVSKMTVHRDLDDLEQAGLLRKVHGGASIQS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
SPQFESDFRYREKIATSEKRRLGEYAATLVEPGQSVIIDDSSTAGAIAGFLKDIRPLTVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEE
TNNLGVITDLSGVPGMNLIALGGHYSKRFNGFFGVVTEEALRSLRADVAFLSSSAVEGTA
ECCCCEEEECCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AFHQDQEVVQIKRQMVKSANRKYLLVDHGKFGRSALHFLMGLEAFDAVLTGSEVSDGHAR
HHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
ELGDAGVGLLRIDNQKIMEKA
HHHCCCEEEEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]