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The map label for this gene is yjjK [C]

Identifier: 150397318

GI number: 150397318

Start: 2180219

End: 2181868

Strand: Reverse

Name: yjjK [C]

Synonym: Smed_2117

Alternate gene names: 150397318

Gene position: 2181868-2180219 (Counterclockwise)

Preceding gene: 150397319

Following gene: 150397317

Centisome position: 57.69

GC content: 61.39

Gene sequence:

>1650_bases
ATGGCACGTCAGTTCATCTATCACATGGCCGGGCTCAACAAGGCCTATGGCAACAAGAAGGTCCTCGAGAACATCCATCT
CTCGTTCTATCCGGAAGCGAAGATCGGCATTCTCGGCCCGAACGGGGCCGGTAAGTCGACCGTGCTCCGGATCATGGCGG
GCCTCGATACCGAATATACCGGCGAGGCATGGGTCGCCGAAGGTGCGAGGGTCGGCTATCTCGCACAGGAGCCTCAGCTC
GACGCTCAGAAGAACGTGCTCGAGAACGTGATGGAAGGGGTCGCCGCCAAGAAGGCGATCCTCGATCGCTACAACGAGCT
GATGATGAATTATTCCGACGAGACCGCGGACGAAGGCGCAAGGCTCCAGGATGTCATCGATAGCCAGAACCTATGGGATC
TCGACAGCCAGGTGGAGATGGCGATGGAAGCCTTGCGCTGCCCGCCGGCGGACGCGGATGTCGCCAATCTGTCCGGTGGC
GAAAAGCGCCGTGTCGCTCTTTGCAAGCTCCTCCTGTCGCAGCCCGAACTGCTTCTGCTCGACGAACCGACCAACCATCT
CGATGCGGAAACGATCGCCTGGCTCGAGAAGCATCTGCGCGAATATCCGGGTGCCGTGCTGATGGTCACTCACGACCGCT
ACTTCCTCGACAACGTCACGGGGTGGATTCTCGAGCTCGACCGCGGCCGGGGAATTCCCTACGAGGGCAACTATTCCGCC
TATCTGCAGTCCAAATCCAAGCGCATGGCCCAGGAAGGGCGCGAAGAGGCTGCCCGCCAGAAAGCGATCAGCCGCGAGCA
GGAGTGGATCTCATCGAGCCCGAAGGCTCGCCAGGCGAAGTCGAAGGCGCGTGTGCGCGCCTATGACGAGCTGGTCAAAG
CGGCCGCGGACCGGCGTCCCGGGGACGCGCAGATCATCATTCCCGTCGGCGAGCGCCTGGGACAGGTCGTCATCGAGGCG
GAGAATATTTCCAAGGGCTACGACGACCAGTTGCTGATCGACGGCCTGACCTTCAAGCTGCCGCCAGGCGGCATCGTCGG
CGTCATCGGCCCGAACGGCGCTGGCAAGACGACGCTCTTCCGCATGATCACCGGCCAGGAGCAGCCGGACGGCGGTTCCA
TCCGCATCGGCGACAGCGTGCAGCTCGCCTATGTCGACCAGAGCCGCGATGCGCTCGATGCGAATAAGACTGTCTTCGAA
GAAATTTCAGGCGGCAACGACGTCATCAAGCTCGGCAAGCACGAGGTCAATGCGCGCGCCTACTGCTCGGCCTTCAACTT
CAAAGGCGGCGATCAGCAGCAGAAAGTCGGCACGCTTTCCGGTGGCCAGCGCAACCGCGTGCACCTTGCAAAGATGCTGA
AGTCCGGCGGTAACGTCGTGCTGCTCGACGAACCGACCAACGACCTCGACACGGAGACTCTGGCGGCGCTCGAGGATGCT
CTCGAGAACTTTGCGGGTTGCGCAGTGATCATCAGCCACGATCGCATGTTCCTCGACCGTCTCGCCACCCATATCCTCGC
CTTCGAGGGCGACAGTCACGTCGAGTGGTTCGAAGGCAACTTCGAGGATTACGAAAAGGACAAGATCCGCCGTCTCGGTC
CGGACTCGGTCAATCCCAAGCGGGTAACCTACAAGCGCCTGACGCGTTAA

Upstream 100 bases:

>100_bases
GTGGCGGGAGCCGTCGAGCAGAGGGCCTTTGGCGTTGCCCCGCCACCATATTTCGCCTACATAGCGGGCAAAATTTCTTC
CGATGCGGAGCATTCCCTCT

Downstream 100 bases:

>100_bases
CGCCGTACGCTTGTGGTGGCGTAGAGCTGAAGTGCAAAACGACAAACGTCCGATGGCTGCACAAAGAACAAAAGTCCTTT
ACGGCGCGGACGCGCCGTAG

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 549; Mature: 548

Protein sequence:

>549_residues
MARQFIYHMAGLNKAYGNKKVLENIHLSFYPEAKIGILGPNGAGKSTVLRIMAGLDTEYTGEAWVAEGARVGYLAQEPQL
DAQKNVLENVMEGVAAKKAILDRYNELMMNYSDETADEGARLQDVIDSQNLWDLDSQVEMAMEALRCPPADADVANLSGG
EKRRVALCKLLLSQPELLLLDEPTNHLDAETIAWLEKHLREYPGAVLMVTHDRYFLDNVTGWILELDRGRGIPYEGNYSA
YLQSKSKRMAQEGREEAARQKAISREQEWISSSPKARQAKSKARVRAYDELVKAAADRRPGDAQIIIPVGERLGQVVIEA
ENISKGYDDQLLIDGLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDGGSIRIGDSVQLAYVDQSRDALDANKTVFE
EISGGNDVIKLGKHEVNARAYCSAFNFKGGDQQQKVGTLSGGQRNRVHLAKMLKSGGNVVLLDEPTNDLDTETLAALEDA
LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKIRRLGPDSVNPKRVTYKRLTR

Sequences:

>Translated_549_residues
MARQFIYHMAGLNKAYGNKKVLENIHLSFYPEAKIGILGPNGAGKSTVLRIMAGLDTEYTGEAWVAEGARVGYLAQEPQL
DAQKNVLENVMEGVAAKKAILDRYNELMMNYSDETADEGARLQDVIDSQNLWDLDSQVEMAMEALRCPPADADVANLSGG
EKRRVALCKLLLSQPELLLLDEPTNHLDAETIAWLEKHLREYPGAVLMVTHDRYFLDNVTGWILELDRGRGIPYEGNYSA
YLQSKSKRMAQEGREEAARQKAISREQEWISSSPKARQAKSKARVRAYDELVKAAADRRPGDAQIIIPVGERLGQVVIEA
ENISKGYDDQLLIDGLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDGGSIRIGDSVQLAYVDQSRDALDANKTVFE
EISGGNDVIKLGKHEVNARAYCSAFNFKGGDQQQKVGTLSGGQRNRVHLAKMLKSGGNVVLLDEPTNDLDTETLAALEDA
LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKIRRLGPDSVNPKRVTYKRLTR
>Mature_548_residues
ARQFIYHMAGLNKAYGNKKVLENIHLSFYPEAKIGILGPNGAGKSTVLRIMAGLDTEYTGEAWVAEGARVGYLAQEPQLD
AQKNVLENVMEGVAAKKAILDRYNELMMNYSDETADEGARLQDVIDSQNLWDLDSQVEMAMEALRCPPADADVANLSGGE
KRRVALCKLLLSQPELLLLDEPTNHLDAETIAWLEKHLREYPGAVLMVTHDRYFLDNVTGWILELDRGRGIPYEGNYSAY
LQSKSKRMAQEGREEAARQKAISREQEWISSSPKARQAKSKARVRAYDELVKAAADRRPGDAQIIIPVGERLGQVVIEAE
NISKGYDDQLLIDGLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDGGSIRIGDSVQLAYVDQSRDALDANKTVFEE
ISGGNDVIKLGKHEVNARAYCSAFNFKGGDQQQKVGTLSGGQRNRVHLAKMLKSGGNVVLLDEPTNDLDTETLAALEDAL
ENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKIRRLGPDSVNPKRVTYKRLTR

Specific function: Probably part of an ABC transporter complex. Probably responsible for energy coupling to the transport system [H]

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=27.7985074626866, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI10947137, Length=528, Percent_Identity=28.9772727272727, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI27881506, Length=528, Percent_Identity=28.9772727272727, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI10947135, Length=555, Percent_Identity=27.3873873873874, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI69354671, Length=555, Percent_Identity=27.3873873873874, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI9665248, Length=221, Percent_Identity=29.8642533936652, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI9955963, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI156105685, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI9955970, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=8e-11,
Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=55.5153707052441, Blast_Score=634, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=527, Percent_Identity=34.1555977229602, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1789751, Length=526, Percent_Identity=31.1787072243346, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1787041, Length=526, Percent_Identity=31.1787072243346, Blast_Score=236, Evalue=4e-63,
Organism=Escherichia coli, GI48994943, Length=494, Percent_Identity=24.0890688259109, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87081782, Length=539, Percent_Identity=23.747680890538, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=31.25, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=30.7339449541284, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=33, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788472, Length=506, Percent_Identity=20.3557312252964, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787029, Length=258, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=243, Percent_Identity=28.8065843621399, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789593, Length=216, Percent_Identity=28.7037037037037, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787089, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=31.5, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=24.901185770751, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87082267, Length=224, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=28.3505154639175, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=26.8398268398268, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786803, Length=189, Percent_Identity=29.1005291005291, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=27.0642201834862, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=26.5567765567766, Blast_Score=201, Evalue=9e-52,
Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=28.4671532846715, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17555318, Length=526, Percent_Identity=25.0950570342205, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI212646699, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=277, Percent_Identity=26.7148014440433, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=237, Percent_Identity=29.957805907173, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=514, Percent_Identity=30.1556420233463, Blast_Score=201, Evalue=2e-52,
Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=28.2003710575139, Blast_Score=191, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6323278, Length=386, Percent_Identity=27.2020725388601, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=378, Percent_Identity=26.4550264550265, Blast_Score=114, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=376, Percent_Identity=24.2021276595745, Blast_Score=101, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24666836, Length=558, Percent_Identity=28.3154121863799, Blast_Score=207, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24642252, Length=536, Percent_Identity=27.9850746268657, Blast_Score=199, Evalue=3e-51,
Organism=Drosophila melanogaster, GI18859989, Length=536, Percent_Identity=27.9850746268657, Blast_Score=199, Evalue=3e-51,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=27.2727272727273, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21357907, Length=215, Percent_Identity=29.7674418604651, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666092, Length=182, Percent_Identity=30.2197802197802, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574533, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022374
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR007406 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60766; Mature: 60635

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQFIYHMAGLNKAYGNKKVLENIHLSFYPEAKIGILGPNGAGKSTVLRIMAGLDTEYT
CCHHHHHHHHCCHHHCCCHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
GEAWVAEGARVGYLAQEPQLDAQKNVLENVMEGVAAKKAILDRYNELMMNYSDETADEGA
CCHHHHCCCEECEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RLQDVIDSQNLWDLDSQVEMAMEALRCPPADADVANLSGGEKRRVALCKLLLSQPELLLL
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
DEPTNHLDAETIAWLEKHLREYPGAVLMVTHDRYFLDNVTGWILELDRGRGIPYEGNYSA
ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCHHH
YLQSKSKRMAQEGREEAARQKAISREQEWISSSPKARQAKSKARVRAYDELVKAAADRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GDAQIIIPVGERLGQVVIEAENISKGYDDQLLIDGLTFKLPPGGIVGVIGPNGAGKTTLF
CCCEEEEECCCCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCEEEEECCCCCCCHHEE
RMITGQEQPDGGSIRIGDSVQLAYVDQSRDALDANKTVFEEISGGNDVIKLGKHEVNARA
EEECCCCCCCCCEEEECCCEEEEEECCCCCHHCCCHHHHHHHCCCCCEEEECCCCCCCHH
YCSAFNFKGGDQQQKVGTLSGGQRNRVHLAKMLKSGGNVVLLDEPTNDLDTETLAALEDA
EEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKIRRLGPDSVNPK
HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCHHHHHHHHHCCCCCCCCC
RVTYKRLTR
HHHHHHHCC
>Mature Secondary Structure 
ARQFIYHMAGLNKAYGNKKVLENIHLSFYPEAKIGILGPNGAGKSTVLRIMAGLDTEYT
CHHHHHHHHCCHHHCCCHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
GEAWVAEGARVGYLAQEPQLDAQKNVLENVMEGVAAKKAILDRYNELMMNYSDETADEGA
CCHHHHCCCEECEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RLQDVIDSQNLWDLDSQVEMAMEALRCPPADADVANLSGGEKRRVALCKLLLSQPELLLL
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
DEPTNHLDAETIAWLEKHLREYPGAVLMVTHDRYFLDNVTGWILELDRGRGIPYEGNYSA
ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCHHH
YLQSKSKRMAQEGREEAARQKAISREQEWISSSPKARQAKSKARVRAYDELVKAAADRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
GDAQIIIPVGERLGQVVIEAENISKGYDDQLLIDGLTFKLPPGGIVGVIGPNGAGKTTLF
CCCEEEEECCCCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCEEEEECCCCCCCHHEE
RMITGQEQPDGGSIRIGDSVQLAYVDQSRDALDANKTVFEEISGGNDVIKLGKHEVNARA
EEECCCCCCCCCEEEECCCEEEEEECCCCCHHCCCHHHHHHHCCCCCEEEECCCCCCCHH
YCSAFNFKGGDQQQKVGTLSGGQRNRVHLAKMLKSGGNVVLLDEPTNDLDTETLAALEDA
EEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKIRRLGPDSVNPK
HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCHHHHHHHHHCCCCCCCCC
RVTYKRLTR
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]