Click here to switch to the map view.

The map label for this gene is 150397309

Identifier: 150397309

GI number: 150397309

Start: 2169202

End: 2170203

Strand: Direct

Name: 150397309

Synonym: Smed_2108

Alternate gene names: NA

Gene position: 2169202-2170203 (Clockwise)

Preceding gene: 150397308

Following gene: 150397311

Centisome position: 57.36

GC content: 61.78

Gene sequence:

>1002_bases
ATGGCGCATTTCCGTATCCCCCTTTCGAAACGGGCACTCACCGCCGTGTCCGTCGTGTCCGTCGTCGTTGCTTCGGGCTG
TTCAACGGTGGAGCATACATCGCTTGCGGAGTTGACGGCGGTACAGACAGTAACGCCCCTGCCGAAGCCCGGAACGGAAA
CCACGGCTTATGCGCTGCCTTCGCCGATCGGTGCCGCGTCGAGCACAACGGCAGCACTGAGCGCGCAGACCTCGCCCACG
GTGCCGGCAAGCGCCACAACGGCAGATGCTGGAGCGAACACGGCGCCCGCCACGGACGCGACCCTGGCCTTTGCCGCACC
TCGCTCCGCTGCGGTGCCGGCGGAGAAGCCCGCCCAAGTCTTTGACGTGGCCATGGCGACACCCGCCTTGCCGAATCTCT
CCCAGGCCGCTGCCCCGATCCAAAAGAACGCTGAACAACCCGCCCCCTTCATCGGAATTGCCGCCTCCTGGGATTCGGAT
TTCGACACCGGCGAGCCTGTCGGACTTGAAACACTCGTGGCCAAGCGCATGATCGTGCCGACGGAGCGCCCGAAGACGGA
CCTGATCGGCACGGCCGTCGATGCGGCAGTGGGTGCGGTCGCAAGCGCTATCCCCGAGTCGTTGAAGTTTTCGAAGACAC
CGACCAGTTCGCGGCCCGAACTCGACAGGATGATCAAATATTATGCCGAGCTGAACGGTCTGCCTCTCGACCTGGTGCAT
CGGGTGGTCAAGCGGGAGAGCAACTACAATCCGCGCGCCTATAGCAAGGGCAATTACGGGCTGATGCAGATTCGCTATAA
CACCGCCAAAGGTCTTGGCTATGAAGGGTCGGCCGAGGGCCTTTTCGATGCGGAAACCAACCTCAAATATGCGACTAGAT
ACCTGCGCGGAGCGTGGATGGTTGCCGACAACAAGAATGACGGCGCGGTCAAGCTCTACGCCAGCGGCTATTATTACCAT
GCCAAGCGCAAGGGCATGCTGGACGAGCTGAACATGAGGTGA

Upstream 100 bases:

>100_bases
TGCCGCCACCGGCGGCATAGGTTAATGGAAATTCACGCGAAGCGGGTGGCACCCGCTGATTTGCCGGGGCTGCGGGGCCC
AGAAGCACGAAAGTGACAAC

Downstream 100 bases:

>100_bases
GGCGCGGCAAGGCTGCGGTCGTTTCGCCCAGCCGGACCTGCTCAATCGAGCGAATCAATAATCTTCGCGTTCAGCTTCTG
CACGTCGTAGCGGAGCCGCG

Product: lytic transglycosylase

Products: NA

Alternate protein names: Transglycosylase Protein; Transglycosylase; Lytic Murein Transglycosylase; Transglycosylase SLT Domain Protein; Soluble Lytic Transglycosylase; Soluble Lytic Murein Transglycosylase; Transmembrane Protein; Transglycosylase Slt Family; Transglycosylase SLT Domain; Transglycosylase SLT Domain-Containing Protein

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MAHFRIPLSKRALTAVSVVSVVVASGCSTVEHTSLAELTAVQTVTPLPKPGTETTAYALPSPIGAASSTTAALSAQTSPT
VPASATTADAGANTAPATDATLAFAAPRSAAVPAEKPAQVFDVAMATPALPNLSQAAAPIQKNAEQPAPFIGIAASWDSD
FDTGEPVGLETLVAKRMIVPTERPKTDLIGTAVDAAVGAVASAIPESLKFSKTPTSSRPELDRMIKYYAELNGLPLDLVH
RVVKRESNYNPRAYSKGNYGLMQIRYNTAKGLGYEGSAEGLFDAETNLKYATRYLRGAWMVADNKNDGAVKLYASGYYYH
AKRKGMLDELNMR

Sequences:

>Translated_333_residues
MAHFRIPLSKRALTAVSVVSVVVASGCSTVEHTSLAELTAVQTVTPLPKPGTETTAYALPSPIGAASSTTAALSAQTSPT
VPASATTADAGANTAPATDATLAFAAPRSAAVPAEKPAQVFDVAMATPALPNLSQAAAPIQKNAEQPAPFIGIAASWDSD
FDTGEPVGLETLVAKRMIVPTERPKTDLIGTAVDAAVGAVASAIPESLKFSKTPTSSRPELDRMIKYYAELNGLPLDLVH
RVVKRESNYNPRAYSKGNYGLMQIRYNTAKGLGYEGSAEGLFDAETNLKYATRYLRGAWMVADNKNDGAVKLYASGYYYH
AKRKGMLDELNMR
>Mature_332_residues
AHFRIPLSKRALTAVSVVSVVVASGCSTVEHTSLAELTAVQTVTPLPKPGTETTAYALPSPIGAASSTTAALSAQTSPTV
PASATTADAGANTAPATDATLAFAAPRSAAVPAEKPAQVFDVAMATPALPNLSQAAAPIQKNAEQPAPFIGIAASWDSDF
DTGEPVGLETLVAKRMIVPTERPKTDLIGTAVDAAVGAVASAIPESLKFSKTPTSSRPELDRMIKYYAELNGLPLDLVHR
VVKRESNYNPRAYSKGNYGLMQIRYNTAKGLGYEGSAEGLFDAETNLKYATRYLRGAWMVADNKNDGAVKLYASGYYYHA
KRKGMLDELNMR

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35096; Mature: 34965

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHFRIPLSKRALTAVSVVSVVVASGCSTVEHTSLAELTAVQTVTPLPKPGTETTAYALP
CCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
SPIGAASSTTAALSAQTSPTVPASATTADAGANTAPATDATLAFAAPRSAAVPAEKPAQV
CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHH
FDVAMATPALPNLSQAAAPIQKNAEQPAPFIGIAASWDSDFDTGEPVGLETLVAKRMIVP
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
TERPKTDLIGTAVDAAVGAVASAIPESLKFSKTPTSSRPELDRMIKYYAELNGLPLDLVH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
RVVKRESNYNPRAYSKGNYGLMQIRYNTAKGLGYEGSAEGLFDAETNLKYATRYLRGAWM
HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCHHHHHHHHHCEEE
VADNKNDGAVKLYASGYYYHAKRKGMLDELNMR
EEECCCCCEEEEEECCEEEECCCCCCHHHCCCC
>Mature Secondary Structure 
AHFRIPLSKRALTAVSVVSVVVASGCSTVEHTSLAELTAVQTVTPLPKPGTETTAYALP
CEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
SPIGAASSTTAALSAQTSPTVPASATTADAGANTAPATDATLAFAAPRSAAVPAEKPAQV
CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHH
FDVAMATPALPNLSQAAAPIQKNAEQPAPFIGIAASWDSDFDTGEPVGLETLVAKRMIVP
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
TERPKTDLIGTAVDAAVGAVASAIPESLKFSKTPTSSRPELDRMIKYYAELNGLPLDLVH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
RVVKRESNYNPRAYSKGNYGLMQIRYNTAKGLGYEGSAEGLFDAETNLKYATRYLRGAWM
HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCHHHHHHHHHCEEE
VADNKNDGAVKLYASGYYYHAKRKGMLDELNMR
EEECCCCCEEEEEECCEEEECCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA