| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is folD2
Identifier: 150397296
GI number: 150397296
Start: 2155208
End: 2156101
Strand: Reverse
Name: folD2
Synonym: Smed_2095
Alternate gene names: 150397296
Gene position: 2156101-2155208 (Counterclockwise)
Preceding gene: 150397297
Following gene: 150397295
Centisome position: 57.01
GC content: 62.64
Gene sequence:
>894_bases ATGGGAATGGATAGAATCGCCGATCGTGCGATCATTGACGGCAAACGGTTCGCCGCCGGACTGCTGGACGATATCACGGC CAGGGTGAAGAAACTGGAGGAAGAGACCGGGCAGGTTCCCGGCCTTGCCGTCGTGCTCGTCGGCGAAGACCCTGCAAGCA GAGTCTATGTCGGGTCGAAGCATCGCCAGACCCTTGCCGCCGGCATCGCTTCATTCAAATACGAGCTTCCGGCAGAAACC ACGCAGGAAGAACTGATGGCGCTGATCGACCGGCTGAACGTCGATCCCGCCGTACACGGCATCCTCGTTCAATTGCCTCT GCCGGCACATCTCGACGCCAACGCCGTCATTCAGGAGATCAACCCGAACAAAGACGTCGACGGCTTTCACATTTCCAATG CCGGACGCCTTGCGACCGGCCAACCGGCATTCGTGCCCTGCACACCGCTCGGCTGCCTTTTACTGCTGAAAGACCGCCTC GGCGCGAACCTGTCGGGGCTCCACGCGGTCGTTCTGGGCAAGTCCAACATAGTCGGCCGGCCGATGGTGCAACTGCTGCT TGCCGAAAGCTGCACGGTGACGATCGCGCATTCGCGCACGCGCAACGCGCCGGAGCTTTGTCGGGAAGCGGATATCCTCA TCGTCGCGGTGGGACGGCCGGGCCTGGTACGTGGCGACTGGATCAAGCCCGGGGCCGTGGTCATCGATGTCGGGATTAAC CGCGTCGAAGCGGAGGGCAAGTCGCGCATCGTCGGCGACGTTGCCTTCGAGGAAGCCGGCCATGCCGGTGCCATTACGCC CGTGCCCGGCGGGGTCGGCCCCATGACAATCGCCTGCCTGCTGTCGAATACCCTGACGGCCTTCTGCCGTCAGCACGCCG TCAATATCGATTGA
Upstream 100 bases:
>100_bases GGAGCGGGATGAGGAAAAGTGTGCTCGGTTGTCCGCCCGCATCCCGCTCTAACTTGCTGCAGCCGGTGCGCCCGGTCCGT TGAACGCGAAAGGAATCCCC
Downstream 100 bases:
>100_bases GCGGCCCGAAAGGATCGTCCGATGCCCGTCCCCTCCAATCGCTATGCATTGCGTGTCGCCTGCCCGTCCATCCGGGGGGT GACTGCTGCCATCGCGACCT
Product: methenyltetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGMDRIADRAIIDGKRFAAGLLDDITARVKKLEEETGQVPGLAVVLVGEDPASRVYVGSKHRQTLAAGIASFKYELPAET TQEELMALIDRLNVDPAVHGILVQLPLPAHLDANAVIQEINPNKDVDGFHISNAGRLATGQPAFVPCTPLGCLLLLKDRL GANLSGLHAVVLGKSNIVGRPMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGIN RVEAEGKSRIVGDVAFEEAGHAGAITPVPGGVGPMTIACLLSNTLTAFCRQHAVNID
Sequences:
>Translated_297_residues MGMDRIADRAIIDGKRFAAGLLDDITARVKKLEEETGQVPGLAVVLVGEDPASRVYVGSKHRQTLAAGIASFKYELPAET TQEELMALIDRLNVDPAVHGILVQLPLPAHLDANAVIQEINPNKDVDGFHISNAGRLATGQPAFVPCTPLGCLLLLKDRL GANLSGLHAVVLGKSNIVGRPMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGIN RVEAEGKSRIVGDVAFEEAGHAGAITPVPGGVGPMTIACLLSNTLTAFCRQHAVNID >Mature_296_residues GMDRIADRAIIDGKRFAAGLLDDITARVKKLEEETGQVPGLAVVLVGEDPASRVYVGSKHRQTLAAGIASFKYELPAETT QEELMALIDRLNVDPAVHGILVQLPLPAHLDANAVIQEINPNKDVDGFHISNAGRLATGQPAFVPCTPLGCLLLLKDRLG ANLSGLHAVVLGKSNIVGRPMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGINR VEAEGKSRIVGDVAFEEAGHAGAITPVPGGVGPMTIACLLSNTLTAFCRQHAVNID
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=294, Percent_Identity=45.2380952380952, Blast_Score=229, Evalue=2e-60, Organism=Homo sapiens, GI222418558, Length=290, Percent_Identity=45.1724137931035, Blast_Score=206, Evalue=1e-53, Organism=Homo sapiens, GI94721354, Length=291, Percent_Identity=43.298969072165, Blast_Score=195, Evalue=4e-50, Organism=Homo sapiens, GI36796743, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1786741, Length=283, Percent_Identity=51.5901060070671, Blast_Score=272, Evalue=2e-74, Organism=Caenorhabditis elegans, GI17568735, Length=289, Percent_Identity=45.6747404844291, Blast_Score=212, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6319558, Length=288, Percent_Identity=44.0972222222222, Blast_Score=232, Evalue=5e-62, Organism=Saccharomyces cerevisiae, GI6321643, Length=299, Percent_Identity=43.1438127090301, Blast_Score=223, Evalue=4e-59, Organism=Drosophila melanogaster, GI17136816, Length=294, Percent_Identity=47.6190476190476, Blast_Score=234, Evalue=5e-62, Organism=Drosophila melanogaster, GI17136818, Length=294, Percent_Identity=47.6190476190476, Blast_Score=234, Evalue=7e-62, Organism=Drosophila melanogaster, GI62472483, Length=294, Percent_Identity=44.5578231292517, Blast_Score=228, Evalue=4e-60, Organism=Drosophila melanogaster, GI45551871, Length=294, Percent_Identity=44.5578231292517, Blast_Score=228, Evalue=4e-60, Organism=Drosophila melanogaster, GI24645718, Length=288, Percent_Identity=45.4861111111111, Blast_Score=227, Evalue=7e-60, Organism=Drosophila melanogaster, GI17137370, Length=288, Percent_Identity=45.4861111111111, Blast_Score=227, Evalue=7e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FOLD2_SINMW (A6UB98)
Other databases:
- EMBL: CP000738 - RefSeq: YP_001327763.1 - ProteinModelPortal: A6UB98 - SMR: A6UB98 - STRING: A6UB98 - GeneID: 5322955 - GenomeReviews: CP000738_GR - KEGG: smd:Smed_2095 - eggNOG: COG0190 - HOGENOM: HBG328751 - OMA: LLEHYHI - ProtClustDB: CLSK2327460 - BioCyc: SMED366394:SMED_2095-MONOMER - GO: GO:0005488 - HAMAP: MF_01576 - InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 - Gene3D: G3DSA:3.40.50.720 - PRINTS: PR00085
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C
EC number: =1.5.1.5; =3.5.4.9
Molecular weight: Translated: 31346; Mature: 31215
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00766 THF_DHG_CYH_1; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMDRIADRAIIDGKRFAAGLLDDITARVKKLEEETGQVPGLAVVLVGEDPASRVYVGSK CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCH HRQTLAAGIASFKYELPAETTQEELMALIDRLNVDPAVHGILVQLPLPAHLDANAVIQEI HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCHHHHHEEC NPNKDVDGFHISNAGRLATGQPAFVPCTPLGCLLLLKDRLGANLSGLHAVVLGKSNIVGR CCCCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCH PMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGIN HHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCCEECCCCCCCCEEEEECCC RVEAEGKSRIVGDVAFEEAGHAGAITPVPGGVGPMTIACLLSNTLTAFCRQHAVNID EEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GMDRIADRAIIDGKRFAAGLLDDITARVKKLEEETGQVPGLAVVLVGEDPASRVYVGSK CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCH HRQTLAAGIASFKYELPAETTQEELMALIDRLNVDPAVHGILVQLPLPAHLDANAVIQEI HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCHHHHHEEC NPNKDVDGFHISNAGRLATGQPAFVPCTPLGCLLLLKDRLGANLSGLHAVVLGKSNIVGR CCCCCCCCEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCH PMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGIN HHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCCEECCCCCCCCEEEEECCC RVEAEGKSRIVGDVAFEEAGHAGAITPVPGGVGPMTIACLLSNTLTAFCRQHAVNID EEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA