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The map label for this gene is 150397254

Identifier: 150397254

GI number: 150397254

Start: 2104296

End: 2104895

Strand: Direct

Name: 150397254

Synonym: Smed_2053

Alternate gene names: NA

Gene position: 2104296-2104895 (Clockwise)

Preceding gene: 150397253

Following gene: 150397255

Centisome position: 55.64

GC content: 57.83

Gene sequence:

>600_bases
ATGAAATCCATACGCATAGTTCTCTGGGCGGCCATTCTGGTCCTGGTGGCCGTTCTCGGCTGGGTAAGCTTCGATATGAC
GCGATCCAAACAGCAGGCTGCTTCCGGCCCCTTCGGGGTACCCTTCACCCTCGTCGCCCAGAACGGCGAGCCGGTCACTG
AAAAGGCCTTCACCGGCAAGCCGACGGCACTGTTCTTCGGCTTCACCCATTGTCCGGAAGTTTGCCCGACAACGCTGTTT
GAACTGAACGGCTGGCTCGAAAAAGTCGATCCCGAGGGGAGCAAGCTGCAGGCCTACTTCATCACCGTCGATCCCGAGCG
CGACACGCCTGAGGTACTCGGTCAGTATGTTTCGAACGTATCCAAGCGCATCACCGGCATCTCCGGTCCGCCCGAGAAGG
TGCTGGAAATGGTGAAGGGCTATCGTGTCTACTACAAGAAGGTCCCCACCGACGAGGCAAAGCCGGAAGGCGACTACACG
ATGGACCATACCGCATCAGTCTTCCTCCTCGATGCGAACGGTCAATTCAGCGGAACGATCGCCTATGGCGAAAATCCGGA
AACGGCCGTCAAAAAGCTGGAAAATCTCACACGGGGCTGA

Upstream 100 bases:

>100_bases
GTGCATGTGAAGCGGTATCAACGCCCTACATTCCTGACGGCCTTACGGCGAAGCGCGTCCGCCCGGATGCGCAATGGGCC
GCAACAGACTGGTGGCAATG

Downstream 100 bases:

>100_bases
CGCTGATCGCCGTCACGACTCCCGCGAGCGTCGGAAAAGCCGGCGCTTTGCGTTTGTCCTCCATTCATGATAGCGGCGAA
ACCGACCACAGCGCAGGCAT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKSIRIVLWAAILVLVAVLGWVSFDMTRSKQQAASGPFGVPFTLVAQNGEPVTEKAFTGKPTALFFGFTHCPEVCPTTLF
ELNGWLEKVDPEGSKLQAYFITVDPERDTPEVLGQYVSNVSKRITGISGPPEKVLEMVKGYRVYYKKVPTDEAKPEGDYT
MDHTASVFLLDANGQFSGTIAYGENPETAVKKLENLTRG

Sequences:

>Translated_199_residues
MKSIRIVLWAAILVLVAVLGWVSFDMTRSKQQAASGPFGVPFTLVAQNGEPVTEKAFTGKPTALFFGFTHCPEVCPTTLF
ELNGWLEKVDPEGSKLQAYFITVDPERDTPEVLGQYVSNVSKRITGISGPPEKVLEMVKGYRVYYKKVPTDEAKPEGDYT
MDHTASVFLLDANGQFSGTIAYGENPETAVKKLENLTRG
>Mature_199_residues
MKSIRIVLWAAILVLVAVLGWVSFDMTRSKQQAASGPFGVPFTLVAQNGEPVTEKAFTGKPTALFFGFTHCPEVCPTTLF
ELNGWLEKVDPEGSKLQAYFITVDPERDTPEVLGQYVSNVSKRITGISGPPEKVLEMVKGYRVYYKKVPTDEAKPEGDYT
MDHTASVFLLDANGQFSGTIAYGENPETAVKKLENLTRG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=141, Percent_Identity=38.2978723404255, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI281182727, Length=163, Percent_Identity=34.3558282208589, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI281182722, Length=163, Percent_Identity=34.3558282208589, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI281182716, Length=163, Percent_Identity=34.3558282208589, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI153791313, Length=163, Percent_Identity=34.3558282208589, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17531419, Length=158, Percent_Identity=32.2784810126582, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=199, Percent_Identity=33.1658291457286, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=204, Percent_Identity=35.2941176470588, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI19920710, Length=164, Percent_Identity=34.7560975609756, Blast_Score=115, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21885; Mature: 21885

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIRIVLWAAILVLVAVLGWVSFDMTRSKQQAASGPFGVPFTLVAQNGEPVTEKAFTGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
PTALFFGFTHCPEVCPTTLFELNGWLEKVDPEGSKLQAYFITVDPERDTPEVLGQYVSNV
CCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
SKRITGISGPPEKVLEMVKGYRVYYKKVPTDEAKPEGDYTMDHTASVFLLDANGQFSGTI
HHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEECCCEEEEEEECCCCEEEEE
AYGENPETAVKKLENLTRG
EECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSIRIVLWAAILVLVAVLGWVSFDMTRSKQQAASGPFGVPFTLVAQNGEPVTEKAFTGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
PTALFFGFTHCPEVCPTTLFELNGWLEKVDPEGSKLQAYFITVDPERDTPEVLGQYVSNV
CCEEEEECHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
SKRITGISGPPEKVLEMVKGYRVYYKKVPTDEAKPEGDYTMDHTASVFLLDANGQFSGTI
HHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEECCCEEEEEEECCCCEEEEE
AYGENPETAVKKLENLTRG
EECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]