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The map label for this gene is rpoE [H]

Identifier: 150397199

GI number: 150397199

Start: 2050306

End: 2050860

Strand: Direct

Name: rpoE [H]

Synonym: Smed_1997

Alternate gene names: 150397199

Gene position: 2050306-2050860 (Clockwise)

Preceding gene: 150397198

Following gene: 150397200

Centisome position: 54.21

GC content: 61.98

Gene sequence:

>555_bases
ATGCCGCACGGCCGTGATGGTCTGAAGAATGGCGCGGGGGAGACGATCTCCTCCCCCGACCCCTTCGAGGATAAAATCCT
GGCGCTGATGCCGGCGCTGCGGCGTTACTCGCGCAGCCTCGCCCGCTCGGATACGGATGGCGAGGACCTGCTGCAGGACT
GCGTCGAAAAAGTGCTTGCCAGACGCATGCAATGGCGAGGCGTGAACCTGCGCGCCTGGGCATTCACCATCATGACAAAC
CTCTATCGCAACGGCCACCGCCACCGTGCGCGGCATCCGGAAGTCGAATTCGATCAGGCGCTGGATCTTCGCGCGGAGGA
GAATAATGCGGATCCTCTGGAGAGGCAGCGCCTTGTGCACGCGCTCGAGCGACTCTCGGCCGATAACCGAGCCGTATTGA
TGCTCGTCGTCATAGAGGGTTATCGCTATCAGGACGTGGCCGATATGATGGAAATCCCGATCGGGACCGTGATGTCCCGC
CTCTCGCGAGCCCGCCGCCAGCTCGCCGAAGCGATGAAGGACGATAATGTGATCGCCCTGCGGAGACCGAAATGA

Upstream 100 bases:

>100_bases
GGCTCCAAGCAGTGGGCGAAGGATGGAATGCCGCTTTATTTCTGGGTGAAGGACAAGAAGATGGGCGATGCGACCGGCGA
CGGCGTGAAGGGCGTATGGG

Downstream 100 bases:

>100_bases
CCGACGAATTCGAAACCGTCTCCGACGCCGAACTGCACGCCTTTGTGGATGACCTTTTGAGCCAATCGGAACGCGCGCGT
GTCGAATCCTGGCTGGAGAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MPHGRDGLKNGAGETISSPDPFEDKILALMPALRRYSRSLARSDTDGEDLLQDCVEKVLARRMQWRGVNLRAWAFTIMTN
LYRNGHRHRARHPEVEFDQALDLRAEENNADPLERQRLVHALERLSADNRAVLMLVVIEGYRYQDVADMMEIPIGTVMSR
LSRARRQLAEAMKDDNVIALRRPK

Sequences:

>Translated_184_residues
MPHGRDGLKNGAGETISSPDPFEDKILALMPALRRYSRSLARSDTDGEDLLQDCVEKVLARRMQWRGVNLRAWAFTIMTN
LYRNGHRHRARHPEVEFDQALDLRAEENNADPLERQRLVHALERLSADNRAVLMLVVIEGYRYQDVADMMEIPIGTVMSR
LSRARRQLAEAMKDDNVIALRRPK
>Mature_183_residues
PHGRDGLKNGAGETISSPDPFEDKILALMPALRRYSRSLARSDTDGEDLLQDCVEKVLARRMQWRGVNLRAWAFTIMTNL
YRNGHRHRARHPEVEFDQALDLRAEENNADPLERQRLVHALERLSADNRAVLMLVVIEGYRYQDVADMMEIPIGTVMSRL
SRARRQLAEAMKDDNVIALRRPK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21189; Mature: 21057

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHGRDGLKNGAGETISSPDPFEDKILALMPALRRYSRSLARSDTDGEDLLQDCVEKVLA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRMQWRGVNLRAWAFTIMTNLYRNGHRHRARHPEVEFDQALDLRAEENNADPLERQRLVH
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH
ALERLSADNRAVLMLVVIEGYRYQDVADMMEIPIGTVMSRLSRARRQLAEAMKDDNVIAL
HHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
RRPK
ECCC
>Mature Secondary Structure 
PHGRDGLKNGAGETISSPDPFEDKILALMPALRRYSRSLARSDTDGEDLLQDCVEKVLA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRMQWRGVNLRAWAFTIMTNLYRNGHRHRARHPEVEFDQALDLRAEENNADPLERQRLVH
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH
ALERLSADNRAVLMLVVIEGYRYQDVADMMEIPIGTVMSRLSRARRQLAEAMKDDNVIAL
HHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
RRPK
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]