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The map label for this gene is yrrC [H]

Identifier: 150397196

GI number: 150397196

Start: 2047308

End: 2048435

Strand: Reverse

Name: yrrC [H]

Synonym: Smed_1994

Alternate gene names: 150397196

Gene position: 2048435-2047308 (Counterclockwise)

Preceding gene: 150397201

Following gene: 150397193

Centisome position: 54.16

GC content: 60.28

Gene sequence:

>1128_bases
ATGCAGTTCGCTCCGCAACAGGATGAGGCCCTGAAGGCCGTTTCGAAATGGTTAAAGGAAGGCCGTTCTCAACTCTTCCG
GCTGTTCGGCTATGCAGGGACCGGCAAGACGACGCTCGCCCGCCATTTCGCAGAAAATGTGGATGGCGAGGTGGTTTTTG
CCGCGTTTACCGGCAAGGCCGCGCAGGTGCTGCGTTCCAAGGGGGCGACGAATGCCAAGACCATTCACTCTCTGATCTAC
CGCCCGCGCGGTGAGGAGGAGGTGGAGAACGAGGAGACAGGGAAGACCTCGATCGCCCCGATGTTCGCGATCAACCGCCA
GAGCCCGGTTGCGAAAGCCGCGCTGATCATTGTCGACGAATGCTCGATGGTGGACGAAGCGCTCGGCAAGGATCTGATGA
GCTTTGGCACGCCAATTCTCGTTCTCGGCGATCCCGGGCAGCTCCCGCCGGTTTCCGGTGGCGGCTACTTTACCAATCAG
GAACCGGATTTTCTCCTGACCGATATCCATCGCCAGGCGAGAGACAACCCGATCATTCAGCTCGCCATGCAGGTGCGAGA
GGGCAAGGAGATCATGCGTGGCGACTATGGCACCGCGCAGGTCATCCCGAAGGGCGAAGTGACACAGCCTCTGGTGCTTG
AGGCAGATCAGGTCCTGGTCGGGACGAACAGGACGCGGCGGCGCTACAACCAAAGACTGCGAGAGCTGAAAGGCTTCACC
AGCGAATATCCGCAATCCGGCGACAAGCTCGTGTGCCTTCGCAACGATCCCGCCAAGGGGCTGCTCAACGGTTCGCTCTG
GCAGGTGATGAGCTCGTCGAAGGAAACGGTCAAGCCGGGGATCAACCTGATGATCCGGCCGGAAGAAGACGACATGAATC
GGGGCGCGGCGAAGATAAAGCTCCTGAAGGCGGCGTTCGAGGATGTCGAGGGTGAAATTCCCTGGACCACGCGCAAGCGC
TACGACGAATTCGACTACGGCTACGCGCTGACCGTGCACAAGGCCCAGGGATCACAGTGGAACAATGTCGTGCTTTTCGA
CGAGAGCTGGGCTTTCCGCGATACGCGCGAACGCTGGCTCTATACGGCGATCACGCGCGCGGCCGAGCGGTTGACGATCG
TGAGGTGA

Upstream 100 bases:

>100_bases
AGATGCTGCAGGAATTTCCGAACGGCTTTCGACCGGTTGTGGCGGCCGAACGGTCAAATCCGCACTTGCGTCCGGCGGCC
GAATCCTGACACTCAGGATC

Downstream 100 bases:

>100_bases
ATGAGGGCTCGCTGTCTCTTATTTCAGTGGTTTGCCGGCTCCTCGTTCTAATAAGTCGGTGCGATCTGCAATTGTGGCAG
CGGCCTTGGGGCGGTTTTGG

Product: exodeoxyribonuclease V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQFAPQQDEALKAVSKWLKEGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKAAQVLRSKGATNAKTIHSLIY
RPRGEEEVENEETGKTSIAPMFAINRQSPVAKAALIIVDECSMVDEALGKDLMSFGTPILVLGDPGQLPPVSGGGYFTNQ
EPDFLLTDIHRQARDNPIIQLAMQVREGKEIMRGDYGTAQVIPKGEVTQPLVLEADQVLVGTNRTRRRYNQRLRELKGFT
SEYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSKETVKPGINLMIRPEEDDMNRGAAKIKLLKAAFEDVEGEIPWTTRKR
YDEFDYGYALTVHKAQGSQWNNVVLFDESWAFRDTRERWLYTAITRAAERLTIVR

Sequences:

>Translated_375_residues
MQFAPQQDEALKAVSKWLKEGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKAAQVLRSKGATNAKTIHSLIY
RPRGEEEVENEETGKTSIAPMFAINRQSPVAKAALIIVDECSMVDEALGKDLMSFGTPILVLGDPGQLPPVSGGGYFTNQ
EPDFLLTDIHRQARDNPIIQLAMQVREGKEIMRGDYGTAQVIPKGEVTQPLVLEADQVLVGTNRTRRRYNQRLRELKGFT
SEYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSKETVKPGINLMIRPEEDDMNRGAAKIKLLKAAFEDVEGEIPWTTRKR
YDEFDYGYALTVHKAQGSQWNNVVLFDESWAFRDTRERWLYTAITRAAERLTIVR
>Mature_375_residues
MQFAPQQDEALKAVSKWLKEGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKAAQVLRSKGATNAKTIHSLIY
RPRGEEEVENEETGKTSIAPMFAINRQSPVAKAALIIVDECSMVDEALGKDLMSFGTPILVLGDPGQLPPVSGGGYFTNQ
EPDFLLTDIHRQARDNPIIQLAMQVREGKEIMRGDYGTAQVIPKGEVTQPLVLEADQVLVGTNRTRRRYNQRLRELKGFT
SEYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSKETVKPGINLMIRPEEDDMNRGAAKIKLLKAAFEDVEGEIPWTTRKR
YDEFDYGYALTVHKAQGSQWNNVVLFDESWAFRDTRERWLYTAITRAAERLTIVR

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 42046; Mature: 42046

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFAPQQDEALKAVSKWLKEGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCHH
AQVLRSKGATNAKTIHSLIYRPRGEEEVENEETGKTSIAPMFAINRQSPVAKAALIIVDE
HHHHHHCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHH
CSMVDEALGKDLMSFGTPILVLGDPGQLPPVSGGGYFTNQEPDFLLTDIHRQARDNPIIQ
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH
LAMQVREGKEIMRGDYGTAQVIPKGEVTQPLVLEADQVLVGTNRTRRRYNQRLRELKGFT
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCH
SEYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSKETVKPGINLMIRPEEDDMNRGAAKIK
HHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEECCCCCCCCCHHHHH
LLKAAFEDVEGEIPWTTRKRYDEFDYGYALTVHKAQGSQWNNVVLFDESWAFRDTRERWL
HHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC
>Mature Secondary Structure
MQFAPQQDEALKAVSKWLKEGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCHH
AQVLRSKGATNAKTIHSLIYRPRGEEEVENEETGKTSIAPMFAINRQSPVAKAALIIVDE
HHHHHHCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHH
CSMVDEALGKDLMSFGTPILVLGDPGQLPPVSGGGYFTNQEPDFLLTDIHRQARDNPIIQ
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH
LAMQVREGKEIMRGDYGTAQVIPKGEVTQPLVLEADQVLVGTNRTRRRYNQRLRELKGFT
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCH
SEYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSKETVKPGINLMIRPEEDDMNRGAAKIK
HHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEECCCCCCCCCHHHHH
LLKAAFEDVEGEIPWTTRKRYDEFDYGYALTVHKAQGSQWNNVVLFDESWAFRDTRERWL
HHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]