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The map label for this gene is ygeA [H]

Identifier: 150397172

GI number: 150397172

Start: 2021273

End: 2021992

Strand: Direct

Name: ygeA [H]

Synonym: Smed_1970

Alternate gene names: 150397172

Gene position: 2021273-2021992 (Clockwise)

Preceding gene: 150397168

Following gene: 150397174

Centisome position: 53.45

GC content: 60.14

Gene sequence:

>720_bases
ATGGAAATGCGCAAAATCGGCCTCATCGGCGGCATGAGCTTCGAAAGTTCGGCTGTCTATTATCGAATGGTCAACGAAGC
CGTACGCGAGCGGCGCGGTAAACTGCATTCCGCGGAAGTGCTTCTGCATTCCGTGGATTTCCAAGGGATCGTGGACCTTC
AAAAAGCCGGCCGCTGGGATGAGGCCGCACTGCGTCTTTCCGATGTTGCCCGCGGGCTCGTCGCCGGTGGGGCCGATTGC
ATTTTGATCTGCACCAATACGATGCACCTGATCGCGGATGCGGTGCAGCGCTCGGTCGATGTTCCGTTGATCAACATCAT
CGACGAGACGGCCCAACGCCTAAAGAGTGCCGGCAGCCGCAAGCCGTTGCTGCTCGCCACCCGCTACACGATGGAACACG
GCTTCTATGCCGAGCGCATGAAAACCCATGGCATCGATCTGATGGTCCCTGACGCCGCCGGCCGCACGCTGACCCATAAT
GTCATTTTCGACGAGCTCTGCGCCGGCCGGGTACTGGACTCCTCGCGCGACGCGCTAATTGCGCTCATCGAAAAAGCAAA
GGCGGATGGCGCGGATGCCGTCATTCTCGGCTGCACCGAAATCTGCCTCATTCTCGATCCTGCCAATCTGCCGATCCCGG
GCTTCGATTCAACCGCCATTCACGCCGAGGCGGCTGTCGAGTTCGCTCTCGGAGGACCGAGCATCACCCGCGCCGCTTGA

Upstream 100 bases:

>100_bases
AACCGCATCCAACCCCACCCGCATGATAATCTAGCAGTGGAACGGAGAAGGTGACGAAGCGTTCCCGAGGGTTCGCAGCA
CAAGAGCAGGGAACGAGATA

Downstream 100 bases:

>100_bases
GCACGAGGTCGCGGCAGCGGATGGGCAGCCGCCCATCCGACATCATGAATTTGCGGGCGCCCGCATGAACTGTTCGAATG
CGAGACGCTTCATGCCGGCG

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MEMRKIGLIGGMSFESSAVYYRMVNEAVRERRGKLHSAEVLLHSVDFQGIVDLQKAGRWDEAALRLSDVARGLVAGGADC
ILICTNTMHLIADAVQRSVDVPLINIIDETAQRLKSAGSRKPLLLATRYTMEHGFYAERMKTHGIDLMVPDAAGRTLTHN
VIFDELCAGRVLDSSRDALIALIEKAKADGADAVILGCTEICLILDPANLPIPGFDSTAIHAEAAVEFALGGPSITRAA

Sequences:

>Translated_239_residues
MEMRKIGLIGGMSFESSAVYYRMVNEAVRERRGKLHSAEVLLHSVDFQGIVDLQKAGRWDEAALRLSDVARGLVAGGADC
ILICTNTMHLIADAVQRSVDVPLINIIDETAQRLKSAGSRKPLLLATRYTMEHGFYAERMKTHGIDLMVPDAAGRTLTHN
VIFDELCAGRVLDSSRDALIALIEKAKADGADAVILGCTEICLILDPANLPIPGFDSTAIHAEAAVEFALGGPSITRAA
>Mature_239_residues
MEMRKIGLIGGMSFESSAVYYRMVNEAVRERRGKLHSAEVLLHSVDFQGIVDLQKAGRWDEAALRLSDVARGLVAGGADC
ILICTNTMHLIADAVQRSVDVPLINIIDETAQRLKSAGSRKPLLLATRYTMEHGFYAERMKTHGIDLMVPDAAGRTLTHN
VIFDELCAGRVLDSSRDALIALIEKAKADGADAVILGCTEICLILDPANLPIPGFDSTAIHAEAAVEFALGGPSITRAA

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=44.5414847161572, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: NA

Molecular weight: Translated: 25754; Mature: 25754

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRKIGLIGGMSFESSAVYYRMVNEAVRERRGKLHSAEVLLHSVDFQGIVDLQKAGRWD
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCCHH
EAALRLSDVARGLVAGGADCILICTNTMHLIADAVQRSVDVPLINIIDETAQRLKSAGSR
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
KPLLLATRYTMEHGFYAERMKTHGIDLMVPDAAGRTLTHNVIFDELCAGRVLDSSRDALI
CCEEEEEEHHHHCCHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHCHHCCCCCHHHH
ALIEKAKADGADAVILGCTEICLILDPANLPIPGFDSTAIHAEAAVEFALGGPSITRAA
HHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCEEHHHHEEEEECCCCCCCCC
>Mature Secondary Structure
MEMRKIGLIGGMSFESSAVYYRMVNEAVRERRGKLHSAEVLLHSVDFQGIVDLQKAGRWD
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCCHH
EAALRLSDVARGLVAGGADCILICTNTMHLIADAVQRSVDVPLINIIDETAQRLKSAGSR
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
KPLLLATRYTMEHGFYAERMKTHGIDLMVPDAAGRTLTHNVIFDELCAGRVLDSSRDALI
CCEEEEEEHHHHCCHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHCHHCCCCCHHHH
ALIEKAKADGADAVILGCTEICLILDPANLPIPGFDSTAIHAEAAVEFALGGPSITRAA
HHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCEEHHHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]