| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is trxA [C]
Identifier: 150397064
GI number: 150397064
Start: 1934795
End: 1935133
Strand: Direct
Name: trxA [C]
Synonym: Smed_1862
Alternate gene names: 150397064
Gene position: 1934795-1935133 (Clockwise)
Preceding gene: 150397059
Following gene: 150397065
Centisome position: 51.16
GC content: 59.29
Gene sequence:
>339_bases ATGCCCACTGCTCCAAACGAGCACCCCACGGATGGGAAAGTCGACACTTGCACTTTCCCGGAAGAAGTTCTGAATTCGCC CCTACCGGTCGTCGCCGCCTTCTCGGGAGATCGTTGCCTGCCGTGCGACGCGGTTGCATTCAGCCTCAAACAAATCGCCA CCGAGCTTGCTGGCAAGGTCAAGGTGGTCAAGATCGACGTCGACGAGAACCTCGATCTCGCGGCGCAGTATGGCGTACGC GAGGTTCCGACGCTTCTCATGTTCAAGGGTGGTGAAGTCGCCGACATCTACGTCGGAACCGGCTCACTCCGCTCATGGAT TTCGGAGGCGCTGGCTTGA
Upstream 100 bases:
>100_bases GACCAGGCACGACTTCGACGTTTACCCTGGTAGCGCATGTTGTTGGGCATTCGTGTGCCCCGAACAACCGAGTGCTTCAT GAACTGAAGGCCAGAAAAAG
Downstream 100 bases:
>100_bases GTCGCCGGTCTTCGCCTCCTTCGATACGCCGAGCGACCAACCCTTCTACCGGCGCATCTGAAACTGATCCGAATGCTCAC CAACGTCCACCTCTGGAGGA
Product: thioredoxin domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 112; Mature: 111
Protein sequence:
>112_residues MPTAPNEHPTDGKVDTCTFPEEVLNSPLPVVAAFSGDRCLPCDAVAFSLKQIATELAGKVKVVKIDVDENLDLAAQYGVR EVPTLLMFKGGEVADIYVGTGSLRSWISEALA
Sequences:
>Translated_112_residues MPTAPNEHPTDGKVDTCTFPEEVLNSPLPVVAAFSGDRCLPCDAVAFSLKQIATELAGKVKVVKIDVDENLDLAAQYGVR EVPTLLMFKGGEVADIYVGTGSLRSWISEALA >Mature_111_residues PTAPNEHPTDGKVDTCTFPEEVLNSPLPVVAAFSGDRCLPCDAVAFSLKQIATELAGKVKVVKIDVDENLDLAAQYGVRE VPTLLMFKGGEVADIYVGTGSLRSWISEALA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=81, Percent_Identity=40.7407407407407, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87082331, Length=108, Percent_Identity=38.8888888888889, Blast_Score=72, Evalue=7e-15, Organism=Escherichia coli, GI1788936, Length=94, Percent_Identity=34.0425531914894, Blast_Score=69, Evalue=5e-14, Organism=Drosophila melanogaster, GI28573567, Length=96, Percent_Identity=36.4583333333333, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24639826, Length=73, Percent_Identity=39.7260273972603, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11921; Mature: 11790
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTAPNEHPTDGKVDTCTFPEEVLNSPLPVVAAFSGDRCLPCDAVAFSLKQIATELAGKV CCCCCCCCCCCCCEECCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE KVVKIDVDENLDLAAQYGVREVPTLLMFKGGEVADIYVGTGSLRSWISEALA EEEEEECCCCCCHHHHCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHCC >Mature Secondary Structure PTAPNEHPTDGKVDTCTFPEEVLNSPLPVVAAFSGDRCLPCDAVAFSLKQIATELAGKV CCCCCCCCCCCCEECCCCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE KVVKIDVDENLDLAAQYGVREVPTLLMFKGGEVADIYVGTGSLRSWISEALA EEEEEECCCCCCHHHHCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7021558 [H]