| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397033
Identifier: 150397033
GI number: 150397033
Start: 1909594
End: 1910589
Strand: Reverse
Name: 150397033
Synonym: Smed_1830
Alternate gene names: NA
Gene position: 1910589-1909594 (Counterclockwise)
Preceding gene: 150397034
Following gene: 150397032
Centisome position: 50.52
GC content: 60.84
Gene sequence:
>996_bases ATGGCAGCTCTTGCCAATACCTATATGACCACTCAAGCCGTGGGCAACCGCGAAGAACTCTCCGATGTGGTCTCGCGCAT CACGCCCGAGGACACCCCGATCTATTCGTTCATCGAAAAGGGCAAGTGCGTTTCCATTCACCCCGAATGGGAAACGGACG AGCTTGCTGCTCCGGGGGAGAACATCAAGAGCGAAGGTGACGAATATGCCTTCGGCGCCATCACCCCGCCCGAGCGCCTG GGCAACTATACCCAGATCATGCGCAAGGACTGGATCATCTCCGGTACGCAGGAAGTCGTTTCCGAGGCCGGCAACGTCCA GAAGCGCAAATACCAGAAGCTGAAGAAGGGCATCGAAATCCGCAAGGACGTCGAATATGCCATCGTCGACACCAACGCCT CGGTCGCCGGCGCGACGCGCGAATTCGGTTCGCTCAACACCTGGATCGAGACCAATGTTTCCCGCGGTGCCGGCGGCGCC AATGGCGGTTTCGACAATGCGACCGGGCTTACGGTGGCCCCGACCGATGGCGAGCAGCGCGCATTCACCAAATCCATTTT GGATAGCGTGATGCAGGCGGGCTATCAGAGCGGCGCCAATTTCCGCCACGTCTCGGTATCGCCCTACGTCAAGAGCGTGT TCGTCACCTTCATGTCGGACAGCAATGTGGCGCCGTTCCGCTACGCGGTCTCGCAAGGCGGCGAGCGCAACACCATCGTT GCCACGGCCGACTATTACGAAGGCCCGTTCGGCACCGTCATGATCCACCCGAACCGCGTTCAGGCGGCGACGGCGGCGAC GGCGCGCAACGCCTTCTTCCTCGATACCGACATGCTGGAATTCCTCTGGCTGCGAAAGATCCAGGAAGACAAGGACGTTG CCAAGACCGGCGACGCCGACAAGGGTGTGATCATAGGCGAGGGCACGCTGAAGGTGAAGAACGAGAAGGGCCTCGGCGTC GCTGCCGACCTCTTCGGGCTGAGCGAGGCAGGCTGA
Upstream 100 bases:
>100_bases GATCGATTTCGAATAACCCCCATCTTCAAACACTTGTCGCGTTTGCGGACGGAAAACCGGATCGCCACTTGTCCTGCAAA CGCTTTCGAAGGATCAGAAC
Downstream 100 bases:
>100_bases ATATAAATGGGCGAGTCTCGGCTCGCCCATTTACCACCGAGGTGGGAATTGCGAACCCGCAACACAAGTGCCGTCATCAA AACGACCACTGAACGCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Related Protein
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MAALANTYMTTQAVGNREELSDVVSRITPEDTPIYSFIEKGKCVSIHPEWETDELAAPGENIKSEGDEYAFGAITPPERL GNYTQIMRKDWIISGTQEVVSEAGNVQKRKYQKLKKGIEIRKDVEYAIVDTNASVAGATREFGSLNTWIETNVSRGAGGA NGGFDNATGLTVAPTDGEQRAFTKSILDSVMQAGYQSGANFRHVSVSPYVKSVFVTFMSDSNVAPFRYAVSQGGERNTIV ATADYYEGPFGTVMIHPNRVQAATAATARNAFFLDTDMLEFLWLRKIQEDKDVAKTGDADKGVIIGEGTLKVKNEKGLGV AADLFGLSEAG
Sequences:
>Translated_331_residues MAALANTYMTTQAVGNREELSDVVSRITPEDTPIYSFIEKGKCVSIHPEWETDELAAPGENIKSEGDEYAFGAITPPERL GNYTQIMRKDWIISGTQEVVSEAGNVQKRKYQKLKKGIEIRKDVEYAIVDTNASVAGATREFGSLNTWIETNVSRGAGGA NGGFDNATGLTVAPTDGEQRAFTKSILDSVMQAGYQSGANFRHVSVSPYVKSVFVTFMSDSNVAPFRYAVSQGGERNTIV ATADYYEGPFGTVMIHPNRVQAATAATARNAFFLDTDMLEFLWLRKIQEDKDVAKTGDADKGVIIGEGTLKVKNEKGLGV AADLFGLSEAG >Mature_330_residues AALANTYMTTQAVGNREELSDVVSRITPEDTPIYSFIEKGKCVSIHPEWETDELAAPGENIKSEGDEYAFGAITPPERLG NYTQIMRKDWIISGTQEVVSEAGNVQKRKYQKLKKGIEIRKDVEYAIVDTNASVAGATREFGSLNTWIETNVSRGAGGAN GGFDNATGLTVAPTDGEQRAFTKSILDSVMQAGYQSGANFRHVSVSPYVKSVFVTFMSDSNVAPFRYAVSQGGERNTIVA TADYYEGPFGTVMIHPNRVQAATAATARNAFFLDTDMLEFLWLRKIQEDKDVAKTGDADKGVIIGEGTLKVKNEKGLGVA ADLFGLSEAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35868; Mature: 35737
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALANTYMTTQAVGNREELSDVVSRITPEDTPIYSFIEKGKCVSIHPEWETDELAAPGE CCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCC NIKSEGDEYAFGAITPPERLGNYTQIMRKDWIISGTQEVVSEAGNVQKRKYQKLKKGIEI CHHCCCCCEEECCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCCCC RKDVEYAIVDTNASVAGATREFGSLNTWIETNVSRGAGGANGGFDNATGLTVAPTDGEQR CCCCEEEEEECCCCCCCCHHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCEEECCCCHHH AFTKSILDSVMQAGYQSGANFRHVSVSPYVKSVFVTFMSDSNVAPFRYAVSQGGERNTIV HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEECCCCCCCHHHHHHCCCCCCEEE ATADYYEGPFGTVMIHPNRVQAATAATARNAFFLDTDMLEFLWLRKIQEDKDVAKTGDAD EEECCCCCCCEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHCCHHHHHCCCCC KGVIIGEGTLKVKNEKGLGVAADLFGLSEAG CCEEEECCEEEEECCCCCEEEHHHCCCCCCC >Mature Secondary Structure AALANTYMTTQAVGNREELSDVVSRITPEDTPIYSFIEKGKCVSIHPEWETDELAAPGE CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCC NIKSEGDEYAFGAITPPERLGNYTQIMRKDWIISGTQEVVSEAGNVQKRKYQKLKKGIEI CHHCCCCCEEECCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCCCC RKDVEYAIVDTNASVAGATREFGSLNTWIETNVSRGAGGANGGFDNATGLTVAPTDGEQR CCCCEEEEEECCCCCCCCHHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCEEECCCCHHH AFTKSILDSVMQAGYQSGANFRHVSVSPYVKSVFVTFMSDSNVAPFRYAVSQGGERNTIV HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEECCCCCCCHHHHHHCCCCCCEEE ATADYYEGPFGTVMIHPNRVQAATAATARNAFFLDTDMLEFLWLRKIQEDKDVAKTGDAD EEECCCCCCCEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHCCHHHHHCCCCC KGVIIGEGTLKVKNEKGLGVAADLFGLSEAG CCEEEECCEEEEECCCCCEEEHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA